Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022190-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_022191-T1 | |
LLU|FUN_022192-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
LLU|FUN_022193-T1 | RAS LIKE FAMILY 10 MEMBER B-RELATED |
LLU|FUN_022194-T1 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |
LLU|FUN_022195-T1 | HIGH-AFFINITY CHOLINE TRANSPORTER 1 |
LLU|FUN_022196-T1 | |
LLU|FUN_022197-T1 | MULTI-COPPER OXIDASE |
LLU|FUN_022198-T1 | |
LLU|FUN_022199-T1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
LLU|FUN_022200-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022201-T1 | |
LLU|FUN_022202-T1 | |
LLU|FUN_022203-T1 | |
LLU|FUN_022204-T1 | REPLICATION PROTEIN A-RELATED |
LLU|FUN_022205-T1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_022206-T1 | |
LLU|FUN_022207-T1 | APRATAXIN-RELATED |
LLU|FUN_022208-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 1 |
LLU|FUN_022209-T1 | FUMARYLACETOACETASE |
LLU|FUN_022210-T1 | PROTEASE M1 ZINC METALLOPROTEASE |
LLU|FUN_022211-T1 | |
LLU|FUN_022212-T1 | OXIDASE/PEROXIDASE |
LLU|FUN_022213-T1 | THIOESTERASE SUPERFAMILY MEMBER-RELATED |
LLU|FUN_022214-T1 | |
LLU|FUN_022215-T1 | |
LLU|FUN_022216-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_022217-T1 | |
LLU|FUN_022218-T1 | |
LLU|FUN_022219-T1 | |
LLU|FUN_022220-T1 | |
LLU|FUN_022221-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022222-T1 | VITELLOGENIN-RELATED |
LLU|FUN_022223-T1 | |
LLU|FUN_022224-T1 | |
LLU|FUN_022225-T1 | 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE |
LLU|FUN_022226-T1 | |
LLU|FUN_022227-T1 | 3-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE |
LLU|FUN_022228-T1 | SI:CH211-262H13.3-RELATED-RELATED |
LLU|FUN_022229-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
LLU|FUN_022230-T1 | HISTONE DEACETYLASE HDAC1-RELATED |
LLU|FUN_022231-T1 | TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED |
LLU|FUN_022232-T1 | RGD1565685 PROTEIN |
LLU|FUN_022233-T1 | |
LLU|FUN_022234-T1 | |
LLU|FUN_022235-T1 | |
LLU|FUN_022236-T1 | FMRFAMIDE RECEPTOR-RELATED |
LLU|FUN_022237-T1 | |
LLU|FUN_022238-T1 | |
LLU|FUN_022239-T1 |