Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_021934-T1 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
LLU|FUN_021935-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_021936-T1 | TRANSFERASE, PUTATIVE-RELATED |
LLU|FUN_021937-T1 | |
LLU|FUN_021938-T1 | RIBONUCLEASE P PROTEIN SUBUNIT P14 |
LLU|FUN_021939-T1 | PORCUPINE |
LLU|FUN_021940-T1 | |
LLU|FUN_021941-T1 | |
LLU|FUN_021942-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021943-T1 | SNF2/RAD54 FAMILY MEMBER |
LLU|FUN_021944-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_021945-T1 | |
LLU|FUN_021946-T1 | AGAP007109-PA |
LLU|FUN_021947-T1 | |
LLU|FUN_021948-T1 | |
LLU|FUN_021949-T1 | ANTIGEN BSP, PUTATIVE-RELATED |
LLU|FUN_021950-T1 | UNCHARACTERIZED |
LLU|FUN_021951-T1 | UNCHARACTERIZED |
LLU|FUN_021952-T1 | |
LLU|FUN_021953-T1 | |
LLU|FUN_021954-T1 | |
LLU|FUN_021955-T1 | WD40 DOMAIN-CONTAINING PROTEIN MIO FAMILY MEMBER |
LLU|FUN_021956-T1 | |
LLU|FUN_021957-T1 | |
LLU|FUN_021958-T1 | SPHINGOMYELIN PHOSPHODIESTERASE |
LLU|FUN_021959-T1 | |
LLU|FUN_021960-T1 | |
LLU|FUN_021961-T1 | |
LLU|FUN_021962-T1 | |
LLU|FUN_021963-T1 | HTH CENPB-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021964-T1 | |
LLU|FUN_021965-T1 | |
LLU|FUN_021966-T1 | SULFATE TRANSPORTER |
LLU|FUN_021967-T1 | SULFATE TRANSPORTER |
LLU|FUN_021968-T1 | |
LLU|FUN_021969-T1 | |
LLU|FUN_021970-T1 | |
LLU|FUN_021971-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
LLU|FUN_021972-T1 | CELL DIVISION CONTROL PROTEIN 6-RELATED |
LLU|FUN_021973-T1 | CELL CYCLE CONTROL PROTEIN CWF22-RELATED |
LLU|FUN_021974-T1 | ANKYRIN REPEAT FAMILY A |
LLU|FUN_021975-T1 | ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER |
LLU|FUN_021976-T1 | |
LLU|FUN_021977-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
LLU|FUN_021978-T1 | |
LLU|FUN_021979-T1 | |
LLU|FUN_021980-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_021981-T1 | GABA-B RECEPTOR |
LLU|FUN_021982-T1 | GABA-B RECEPTOR |
LLU|FUN_021983-T1 | GUANYLYL CYCLASE |