Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_021682-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_021683-T1 | ZINC FINGER PROTEIN |
LLU|FUN_021684-T1 | ZINC FINGER PROTEIN |
LLU|FUN_021685-T1 | |
LLU|FUN_021686-T1 | |
LLU|FUN_021687-T1 | DYNEIN HEAVY CHAIN |
LLU|FUN_021688-T1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
LLU|FUN_021689-T1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
LLU|FUN_021690-T1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
LLU|FUN_021691-T1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
LLU|FUN_021692-T1 | PROTEIN EVA-1 |
LLU|FUN_021693-T1 | |
LLU|FUN_021694-T1 | PROTEIN EVA-1 |
LLU|FUN_021695-T1 | PROTEIN EVA-1 |
LLU|FUN_021696-T1 | |
LLU|FUN_021697-T1 | |
LLU|FUN_021698-T1 | |
LLU|FUN_021699-T1 | |
LLU|FUN_021700-T1 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
LLU|FUN_021701-T1 | UNCHARACTERIZED |
LLU|FUN_021702-T1 | DEATH EFFECTOR DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021703-T1 | ACTIVATING SIGNAL COINTEGRATOR 1 COMPLEX SUBUNIT 2 ASC-1 COMPLEX SUBUNIT P100 |
LLU|FUN_021704-T1 | UNCHARACTERIZED |
LLU|FUN_021705-T1 | ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED |
LLU|FUN_021706-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_021707-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_021708-T1 | |
LLU|FUN_021709-T1 | |
LLU|FUN_021710-T1 | SOLUTE CARRIER FAMILY 13 MEMBER |
LLU|FUN_021711-T1 | |
LLU|FUN_021712-T1 | |
LLU|FUN_021713-T1 | RIBONUCLEASE P SUBUNIT P21 |
LLU|FUN_021714-T1 | CENTRIOLAR COILED-COIL PROTEIN OF 110 KDA |
LLU|FUN_021715-T1 | |
LLU|FUN_021716-T1 | |
LLU|FUN_021717-T1 | ATP-BINDING CASSETTE SUB-FAMILY C |
LLU|FUN_021718-T1 | |
LLU|FUN_021719-T1 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
LLU|FUN_021720-T1 | DYNEIN HEAVY CHAIN |
LLU|FUN_021721-T1 | DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 |
LLU|FUN_021722-T1 | UPF0602 PROTEIN C4ORF47 |
LLU|FUN_021723-T1 | FATTY ACID ACYL TRANSFERASE-RELATED |
LLU|FUN_021724-T1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
LLU|FUN_021725-T1 | DIACYLGLYCEROL LIPASE HOMOLOG-RELATED |
LLU|FUN_021726-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_021727-T1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
LLU|FUN_021728-T1 | |
LLU|FUN_021729-T1 | |
LLU|FUN_021730-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_021731-T1 |