Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_021482-T1 | |
LLU|FUN_021483-T1 | |
LLU|FUN_021484-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_021485-T1 | |
LLU|FUN_021486-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021487-T1 | |
LLU|FUN_021488-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_021489-T1 | |
LLU|FUN_021490-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_021491-T1 | |
LLU|FUN_021492-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_021493-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_021494-T1 | |
LLU|FUN_021495-T1 | |
LLU|FUN_021496-T1 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
LLU|FUN_021497-T1 | SOLUTE CARRIER FAMILY 43 MEMBER 3-RELATED |
LLU|FUN_021498-T1 | HL01030P-RELATED |
LLU|FUN_021499-T1 | UNCHARACTERIZED |
LLU|FUN_021500-T1 | |
LLU|FUN_021501-T1 | |
LLU|FUN_021502-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_021503-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_021504-T1 | |
LLU|FUN_021505-T1 | |
LLU|FUN_021506-T1 | |
LLU|FUN_021507-T1 | |
LLU|FUN_021508-T1 | |
LLU|FUN_021509-T1 | MIX-TYPE HOMEOBOX GENE 1-RELATED |
LLU|FUN_021510-T1 | THO COMPLEX SUBUNIT 6 HOMOLOG |
LLU|FUN_021511-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 1 |
LLU|FUN_021512-T1 | METHYL-CPG BINDING PROTEIN, DROSOPHILA |
LLU|FUN_021513-T1 | STEP II SPLICING FACTOR SLU7 |
LLU|FUN_021514-T1 | NITRIC OXIDE-ASSOCIATED PROTEIN 1 |
LLU|FUN_021515-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021516-T1 | |
LLU|FUN_021517-T1 | TESTICULAR HAPLOID EXPRESSED GENE PROTEIN |
LLU|FUN_021518-T1 | HSPC111 PROTEIN-RELATED |
LLU|FUN_021519-T1 | PEPTIDYL-TRNA HYDROLASE |
LLU|FUN_021520-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
LLU|FUN_021521-T1 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS C |
LLU|FUN_021522-T1 | NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER |
LLU|FUN_021523-T1 | AMMONIUM TRANSPORTER |
LLU|FUN_021524-T1 | |
LLU|FUN_021525-T1 | |
LLU|FUN_021526-T1 | AMMONIUM TRANSPORTER |
LLU|FUN_021527-T1 | AMMONIUM TRANSPORTER |
LLU|FUN_021528-T1 | WSCD FAMILY MEMBER CG9164 |
LLU|FUN_021529-T1 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
LLU|FUN_021530-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 19 |
LLU|FUN_021531-T1 |