About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_021231-T1
LLU|FUN_021232-T1
LLU|FUN_021233-T1
LLU|FUN_021234-T1
LLU|FUN_021235-T1
LLU|FUN_021236-T1
LLU|FUN_021237-T1
LLU|FUN_021238-T1OPSIN
LLU|FUN_021239-T1
LLU|FUN_021240-T1GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5
LLU|FUN_021241-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA
LLU|FUN_021242-T1
LLU|FUN_021243-T1NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER
LLU|FUN_021244-T1ZINC FINGER PROTEIN
LLU|FUN_021245-T1
LLU|FUN_021246-T1
LLU|FUN_021247-T1INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E
LLU|FUN_021248-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
LLU|FUN_021249-T1SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN
LLU|FUN_021250-T1
LLU|FUN_021251-T1
LLU|FUN_021252-T1
LLU|FUN_021253-T1XANTHINE DEHYDROGENASE
LLU|FUN_021254-T1
LLU|FUN_021255-T1
LLU|FUN_021256-T1MHC CLASS II TRANSACTIVATOR
LLU|FUN_021257-T1BARDET-BIEDL SYNDROME 1 PROTEIN
LLU|FUN_021258-T1SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN
LLU|FUN_021259-T1
LLU|FUN_021260-T1
LLU|FUN_021261-T1
LLU|FUN_021262-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_021263-T1CENTROSOMAL PROTEIN OF 78 KDA
LLU|FUN_021264-T1CENTROSOMAL PROTEIN OF 78 KDA
LLU|FUN_021265-T1
LLU|FUN_021266-T1CENTROSOMAL PROTEIN OF 78 KDA
LLU|FUN_021267-T1DNAJ-LIKE-2, ISOFORM A-RELATED
LLU|FUN_021268-T1E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER
LLU|FUN_021269-T1SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1
LLU|FUN_021270-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 152
LLU|FUN_021271-T1VESICLE PROTEIN SORTING-ASSOCIATED
LLU|FUN_021272-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_021273-T1DIMETHYLADENOSINE TRANSFERASE
LLU|FUN_021274-T1
LLU|FUN_021275-T1
LLU|FUN_021276-T1
LLU|FUN_021277-T1ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED
LLU|FUN_021278-T1ANKYRIN REPEAT CONTAINING
LLU|FUN_021279-T1INOSITOL POLYPHOSPHATE KINASE
LLU|FUN_021280-T1MOLYBDOPTERIN BIOSYNTHESIS PROTEIN
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