Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_021231-T1 | |
LLU|FUN_021232-T1 | |
LLU|FUN_021233-T1 | |
LLU|FUN_021234-T1 | |
LLU|FUN_021235-T1 | |
LLU|FUN_021236-T1 | |
LLU|FUN_021237-T1 | |
LLU|FUN_021238-T1 | OPSIN |
LLU|FUN_021239-T1 | |
LLU|FUN_021240-T1 | GENERAL TRANSCRIPTION FACTOR IIIC, POLYPEPTIDE 5 |
LLU|FUN_021241-T1 | CALCIUM-ACTIVATED POTASSIUM CHANNEL SUBUNIT BETA |
LLU|FUN_021242-T1 | |
LLU|FUN_021243-T1 | NEUROPATHY TARGET ESTERASE/SWISS CHEESE D.MELANOGASTER |
LLU|FUN_021244-T1 | ZINC FINGER PROTEIN |
LLU|FUN_021245-T1 | |
LLU|FUN_021246-T1 | |
LLU|FUN_021247-T1 | INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E |
LLU|FUN_021248-T1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
LLU|FUN_021249-T1 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
LLU|FUN_021250-T1 | |
LLU|FUN_021251-T1 | |
LLU|FUN_021252-T1 | |
LLU|FUN_021253-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_021254-T1 | |
LLU|FUN_021255-T1 | |
LLU|FUN_021256-T1 | MHC CLASS II TRANSACTIVATOR |
LLU|FUN_021257-T1 | BARDET-BIEDL SYNDROME 1 PROTEIN |
LLU|FUN_021258-T1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
LLU|FUN_021259-T1 | |
LLU|FUN_021260-T1 | |
LLU|FUN_021261-T1 | |
LLU|FUN_021262-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_021263-T1 | CENTROSOMAL PROTEIN OF 78 KDA |
LLU|FUN_021264-T1 | CENTROSOMAL PROTEIN OF 78 KDA |
LLU|FUN_021265-T1 | |
LLU|FUN_021266-T1 | CENTROSOMAL PROTEIN OF 78 KDA |
LLU|FUN_021267-T1 | DNAJ-LIKE-2, ISOFORM A-RELATED |
LLU|FUN_021268-T1 | E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER |
LLU|FUN_021269-T1 | SPINDLE AND CENTRIOLE ASSOCIATED PROTEIN 1 SPICE1 |
LLU|FUN_021270-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 152 |
LLU|FUN_021271-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
LLU|FUN_021272-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_021273-T1 | DIMETHYLADENOSINE TRANSFERASE |
LLU|FUN_021274-T1 | |
LLU|FUN_021275-T1 | |
LLU|FUN_021276-T1 | |
LLU|FUN_021277-T1 | ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED |
LLU|FUN_021278-T1 | ANKYRIN REPEAT CONTAINING |
LLU|FUN_021279-T1 | INOSITOL POLYPHOSPHATE KINASE |
LLU|FUN_021280-T1 | MOLYBDOPTERIN BIOSYNTHESIS PROTEIN |