About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_021331-T1
LLU|FUN_021332-T1SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
LLU|FUN_021333-T1FIBROUS SHEATH CABYR-BINDING PROTEIN
LLU|FUN_021334-T1TOLL-LIKE RECEPTOR
LLU|FUN_021335-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_021336-T1
LLU|FUN_021337-T1SODIUM/CHLORIDE DEPENDENT TRANSPORTER
LLU|FUN_021338-T1NETRIN/LAMININ-RELATED
LLU|FUN_021339-T1
LLU|FUN_021340-T1
LLU|FUN_021341-T1
LLU|FUN_021342-T1
LLU|FUN_021343-T1
LLU|FUN_021344-T1REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT
LLU|FUN_021345-T1
LLU|FUN_021346-T1
LLU|FUN_021347-T1SERINE-THREONINE PROTEIN KINASE
LLU|FUN_021348-T1SERINE/THREONINE/TYROSINE-INTERACTING-LIKE PROTEIN 1
LLU|FUN_021349-T1
LLU|FUN_021350-T1-
LLU|FUN_021351-T1
LLU|FUN_021352-T1
LLU|FUN_021353-T1
LLU|FUN_021354-T1NUCLEOLAR PROTEIN 7/ESTROGEN RECEPTOR COACTIVATOR-RELATED
LLU|FUN_021355-T1WD40 REPEAT PROTEIN
LLU|FUN_021356-T1PHOSPHOLIPID SCRAMBLASE-RELATED
LLU|FUN_021357-T1
LLU|FUN_021358-T1
LLU|FUN_021359-T1DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
LLU|FUN_021360-T1
LLU|FUN_021361-T1UNCHARACTERIZED
LLU|FUN_021362-T1GLUTAMATE--TRNA LIGASE
LLU|FUN_021363-T1HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3
LLU|FUN_021364-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
LLU|FUN_021365-T1
LLU|FUN_021366-T1
LLU|FUN_021367-T1CONTACTIN 5
LLU|FUN_021368-T1
LLU|FUN_021369-T1
LLU|FUN_021370-T1
LLU|FUN_021372-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_021373-T1
LLU|FUN_021374-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
LLU|FUN_021375-T1
LLU|FUN_021376-T1
LLU|FUN_021377-T1KH DOMAIN CONTAINING RNA BINDING PROTEIN
LLU|FUN_021378-T1
LLU|FUN_021379-T1ALTERNATIVE OXIDASE
LLU|FUN_021380-T1
LLU|FUN_021381-T1LEISHMANOLYSIN-LIKE PEPTIDASE
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