About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_021281-T1TWO PORE CHANNEL 3
LLU|FUN_021282-T1
LLU|FUN_021283-T1
LLU|FUN_021284-T1
LLU|FUN_021285-T1
LLU|FUN_021286-T1RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
LLU|FUN_021287-T1
LLU|FUN_021288-T1MULTICOPPER OXIDASE-RELATED
LLU|FUN_021289-T1
LLU|FUN_021290-T1CYTOCHROME C OXIDASE POLYPEPTIDE VIC-2
LLU|FUN_021291-T1PEPTIDASE
LLU|FUN_021292-T1
LLU|FUN_021293-T1
LLU|FUN_021294-T1
LLU|FUN_021295-T1GREMLIN 1
LLU|FUN_021296-T1
LLU|FUN_021297-T1
LLU|FUN_021298-T1
LLU|FUN_021299-T1PROTEIN DIAPHANOUS
LLU|FUN_021300-T1DUMPY: SHORTER THAN WILD-TYPE
LLU|FUN_021301-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12
LLU|FUN_021302-T1
LLU|FUN_021303-T1
LLU|FUN_021304-T1THUMP DOMAIN-CONTAINING
LLU|FUN_021305-T1
LLU|FUN_021306-T1
LLU|FUN_021307-T1PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED
LLU|FUN_021308-T1UNCHARACTERIZED
LLU|FUN_021309-T1UNCHARACTERIZED
LLU|FUN_021310-T1
LLU|FUN_021311-T1STAR-RELATED LIPID TRANSFER PROTEIN 9
LLU|FUN_021312-T126S PROTEASOME REGULATORY SUBUNIT
LLU|FUN_021313-T1MITOCHONDRIAL GENOME MAINTENANCE EXONUCLEASE 1
LLU|FUN_021314-T1CYSTEINE-RICH MOTOR NEURON 1 PROTEIN
LLU|FUN_021315-T1
LLU|FUN_021316-T1
LLU|FUN_021317-T1UNCHARACTERIZED
LLU|FUN_021318-T1UNCHARACTERIZED
LLU|FUN_021319-T1GH04784P
LLU|FUN_021320-T1WD REPEAT-CONTAINING PROTEIN 27
LLU|FUN_021321-T1KATNB1-LIKE PROTEIN 1
LLU|FUN_021322-T1VISUAL SYSTEM HOMEOBOX 2
LLU|FUN_021323-T1VISUAL SYSTEM HOMEOBOX 2
LLU|FUN_021324-T1
LLU|FUN_021325-T1VISUAL SYSTEM HOMEOBOX 2
LLU|FUN_021326-T1VISUAL SYSTEM HOMEOBOX 2
LLU|FUN_021327-T1
LLU|FUN_021328-T1
LLU|FUN_021329-T1MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 12
LLU|FUN_021330-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
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