Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_020924-T1 | |
LLU|FUN_020925-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_020926-T1 | |
LLU|FUN_020927-T1 | MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2 |
LLU|FUN_020928-T1 | MCG48959-RELATED |
LLU|FUN_020929-T1 | |
LLU|FUN_020930-T1 | DUF914-RELATED |
LLU|FUN_020931-T1 | DRAB11-RELATED |
LLU|FUN_020932-T1 | CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER |
LLU|FUN_020933-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_020934-T1 | ACTIN |
LLU|FUN_020935-T1 | WD40 REPEAT PROTEIN |
LLU|FUN_020936-T1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
LLU|FUN_020937-T1 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED |
LLU|FUN_020938-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_020939-T1 | UNCHARACTERIZED |
LLU|FUN_020940-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 |
LLU|FUN_020941-T1 | SHIPPO-1-RELATED |
LLU|FUN_020942-T1 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER |
LLU|FUN_020943-T1 | DEP DOMAIN-CONTAINING |
LLU|FUN_020944-T1 | |
LLU|FUN_020945-T1 | TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 |
LLU|FUN_020946-T1 | ACID AMIDASE |
LLU|FUN_020947-T1 | DPY-19-LIKE 1, LIKE (H. SAPIENS) |
LLU|FUN_020948-T1 | DPY-19-LIKE 1, LIKE (H. SAPIENS) |
LLU|FUN_020949-T1 | FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN |
LLU|FUN_020950-T1 | MIXED LINEAGE PROTEIN KINASE |
LLU|FUN_020951-T1 | D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH |
LLU|FUN_020952-T1 | |
LLU|FUN_020953-T1 | MUCIN 4-RELATED |
LLU|FUN_020954-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_020955-T1 | |
LLU|FUN_020956-T1 | |
LLU|FUN_020957-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_020958-T1 | HYDROXYMETHYLGLUTARYL-COA LYASE |
LLU|FUN_020959-T1 | |
LLU|FUN_020960-T1 | |
LLU|FUN_020961-T1 | KELCH DOMAIN-CONTAINING PROTEIN 3 |
LLU|FUN_020962-T1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
LLU|FUN_020963-T1 | |
LLU|FUN_020964-T1 | |
LLU|FUN_020965-T1 | MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK |
LLU|FUN_020966-T1 | BETA-1,4-GALACTOSYLTRANSFERASE |
LLU|FUN_020967-T1 | |
LLU|FUN_020968-T1 | |
LLU|FUN_020969-T1 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
LLU|FUN_020970-T1 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
LLU|FUN_020971-T1 | NME/NM23 FAMILY MEMBER 8 |
LLU|FUN_020972-T1 | VACUOLAR PROTEIN SORTING VPS41 |
LLU|FUN_020973-T1 |