About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_020924-T1
LLU|FUN_020925-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
LLU|FUN_020926-T1
LLU|FUN_020927-T1MOTILE SPERM DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_020928-T1MCG48959-RELATED
LLU|FUN_020929-T1
LLU|FUN_020930-T1DUF914-RELATED
LLU|FUN_020931-T1DRAB11-RELATED
LLU|FUN_020932-T1CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER
LLU|FUN_020933-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_020934-T1ACTIN
LLU|FUN_020935-T1WD40 REPEAT PROTEIN
LLU|FUN_020936-T1PDZ AND LIM DOMAIN PROTEIN ZASP
LLU|FUN_020937-T1TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED
LLU|FUN_020938-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
LLU|FUN_020939-T1UNCHARACTERIZED
LLU|FUN_020940-T1TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12
LLU|FUN_020941-T1SHIPPO-1-RELATED
LLU|FUN_020942-T1CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER
LLU|FUN_020943-T1DEP DOMAIN-CONTAINING
LLU|FUN_020944-T1
LLU|FUN_020945-T1TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11
LLU|FUN_020946-T1ACID AMIDASE
LLU|FUN_020947-T1DPY-19-LIKE 1, LIKE (H. SAPIENS)
LLU|FUN_020948-T1DPY-19-LIKE 1, LIKE (H. SAPIENS)
LLU|FUN_020949-T1FGFR1 ONCOGENE PARTNER/LISH DOMAIN-CONTAINING PROTEIN
LLU|FUN_020950-T1MIXED LINEAGE PROTEIN KINASE
LLU|FUN_020951-T1D-ALANYL-D-ALANINE-CARBOXYPEPTIDASE/ENDOPEPTIDASE AMPH
LLU|FUN_020952-T1
LLU|FUN_020953-T1MUCIN 4-RELATED
LLU|FUN_020954-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
LLU|FUN_020955-T1
LLU|FUN_020956-T1
LLU|FUN_020957-T1MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED
LLU|FUN_020958-T1HYDROXYMETHYLGLUTARYL-COA LYASE
LLU|FUN_020959-T1
LLU|FUN_020960-T1
LLU|FUN_020961-T1KELCH DOMAIN-CONTAINING PROTEIN 3
LLU|FUN_020962-T1NOP SEVEN ASSOCIATED PROTEIN 1
LLU|FUN_020963-T1
LLU|FUN_020964-T1
LLU|FUN_020965-T1MEMBRANE-ASSOCIATED GUANYLATE KINASE MAGUK
LLU|FUN_020966-T1BETA-1,4-GALACTOSYLTRANSFERASE
LLU|FUN_020967-T1
LLU|FUN_020968-T1
LLU|FUN_020969-T1METHYLTRANSFERASE, FKBM FAMILY PROTEIN
LLU|FUN_020970-T1METHYLTRANSFERASE, FKBM FAMILY PROTEIN
LLU|FUN_020971-T1NME/NM23 FAMILY MEMBER 8
LLU|FUN_020972-T1VACUOLAR PROTEIN SORTING VPS41
LLU|FUN_020973-T1
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