Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_020774-T1 | |
LLU|FUN_020775-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020776-T1 | |
LLU|FUN_020777-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
LLU|FUN_020778-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020779-T1 | |
LLU|FUN_020780-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020781-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020782-T1 | |
LLU|FUN_020783-T1 | |
LLU|FUN_020784-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020785-T1 | OSJNBA0004B13.7 PROTEIN |
LLU|FUN_020786-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020787-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_020788-T1 | |
LLU|FUN_020789-T1 | |
LLU|FUN_020790-T1 | SI:CH211-243P7.3-RELATED |
LLU|FUN_020791-T1 | |
LLU|FUN_020792-T1 | |
LLU|FUN_020793-T1 | |
LLU|FUN_020794-T1 | SI:DKEY-9I5.2-RELATED |
LLU|FUN_020795-T1 | |
LLU|FUN_020796-T1 | FATTY ACID SYNTHASE |
LLU|FUN_020797-T1 | |
LLU|FUN_020798-T1 | FATTY ACID SYNTHASE |
LLU|FUN_020799-T1 | |
LLU|FUN_020800-T1 | FATTY ACID SYNTHASE |
LLU|FUN_020801-T1 | |
LLU|FUN_020802-T1 | |
LLU|FUN_020803-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_020804-T1 | |
LLU|FUN_020805-T1 | |
LLU|FUN_020806-T1 | |
LLU|FUN_020807-T1 | ZINC FINGER PROTEIN 106 |
LLU|FUN_020808-T1 | SYNAPTOSOMAL ASSOCIATED PROTEIN |
LLU|FUN_020809-T1 | - |
LLU|FUN_020810-T1 | CANCER-RELATED NUCLEOSIDE-TRIPHOSPHATASE |
LLU|FUN_020811-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED |
LLU|FUN_020812-T1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
LLU|FUN_020813-T1 | |
LLU|FUN_020814-T1 | LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED |
LLU|FUN_020815-T1 | |
LLU|FUN_020816-T1 | |
LLU|FUN_020817-T1 | |
LLU|FUN_020818-T1 | ANKYRIN REPEAT CONTAINING |
LLU|FUN_020819-T1 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
LLU|FUN_020820-T1 | UBIQUITIN THIOLESTERASE PROTEIN OTUB |
LLU|FUN_020821-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |
LLU|FUN_020822-T1 | |
LLU|FUN_020823-T1 | TESTICULAR SOLUBLE ADENYLYL CYCLASE |