About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_020523-T1CASEIN KINASE-RELATED
LLU|FUN_020524-T1TRNA-DIHYDROURIDINE(20) SYNTHASE [NAD(P)+]-LIKE
LLU|FUN_020525-T1PAR-6-RELATED
LLU|FUN_020526-T1SELECTIN LIGAND RELATED
LLU|FUN_020527-T1SELECTIN LIGAND RELATED
LLU|FUN_020528-T1CYSTEINE AND HISTIDINE-RICH PROTEIN 1
LLU|FUN_020529-T1PHOSPHATIDYLINOSITIDE PHOSPHATASE SAC1
LLU|FUN_020530-T1ENGULFMENT AND CELL MOTILITY
LLU|FUN_020531-T1PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG
LLU|FUN_020532-T1
LLU|FUN_020533-T1
LLU|FUN_020534-T1
LLU|FUN_020535-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_020536-T1
LLU|FUN_020537-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_020538-T1MAP/MICROTUBULE AFFINITY-REGULATING KINASE
LLU|FUN_020539-T1
LLU|FUN_020540-T1
LLU|FUN_020541-T1CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP
LLU|FUN_020542-T1
LLU|FUN_020543-T1ANKYRIN REPEAT FAMILY PROTEIN
LLU|FUN_020544-T1
LLU|FUN_020545-T1SRCR DOMAIN-CONTAINING PROTEIN
LLU|FUN_020546-T1
LLU|FUN_020547-T1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
LLU|FUN_020548-T1
LLU|FUN_020549-T1PLECKSTRIN HOMOLOGY DOMAIN-CONTAINING FAMILY G MEMBER 7
LLU|FUN_020550-T1
LLU|FUN_020551-T1
LLU|FUN_020552-T1
LLU|FUN_020553-T1
LLU|FUN_020554-T1
LLU|FUN_020555-T1CHLORIDE CHANNEL PROTEIN 2
LLU|FUN_020556-T1
LLU|FUN_020557-T1
LLU|FUN_020558-T1CHLORIDE CHANNEL PROTEIN 2
LLU|FUN_020559-T1
LLU|FUN_020560-T1D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL
LLU|FUN_020561-T1GLYCOSYLTRANSFERASE 14 FAMILY MEMBER
LLU|FUN_020562-T1DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
LLU|FUN_020563-T1
LLU|FUN_020564-T1TRANSLOCON-ASSOCIATED PROTEIN, ALPHA SUBUNIT
LLU|FUN_020565-T1
LLU|FUN_020566-T1
LLU|FUN_020567-T1
LLU|FUN_020568-T1
LLU|FUN_020569-T1
LLU|FUN_020570-T1ATAXIN 1
LLU|FUN_020571-T1ATAXIN 1
LLU|FUN_020572-T1
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