Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_020321-T1 | CDC42 GTPASE-ACTIVATING PROTEIN |
LLU|FUN_020322-T1 | COATOMER SUBUNIT DELTA |
LLU|FUN_020323-T1 | UNCHARACTERIZED |
LLU|FUN_020324-T1 | |
LLU|FUN_020325-T1 | PORPHOBILINOGEN DEAMINASE |
LLU|FUN_020326-T1 | EPM2A-INTERACTING PROTEIN 1 |
LLU|FUN_020327-T1 | ZINC FINGER PROTEIN |
LLU|FUN_020328-T1 | |
LLU|FUN_020329-T1 | |
LLU|FUN_020332-T1 | PASIFLORA 1, ISOFORM A-RELATED |
LLU|FUN_020333-T1 | PROTOPORPHYRINOGEN OXIDASE |
LLU|FUN_020334-T1 | |
LLU|FUN_020335-T1 | |
LLU|FUN_020336-T1 | |
LLU|FUN_020337-T1 | |
LLU|FUN_020338-T1 | |
LLU|FUN_020339-T1 | |
LLU|FUN_020340-T1 | |
LLU|FUN_020341-T1 | |
LLU|FUN_020342-T1 | |
LLU|FUN_020343-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_020344-T1 | SYNAPTOBREVIN FAMILY MEMBER |
LLU|FUN_020345-T1 | PUTATIVE ATP-ASE |
LLU|FUN_020346-T1 | ATP DEPENDENT LON PROTEASE FAMILY MEMBER |
LLU|FUN_020347-T1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
LLU|FUN_020348-T1 | UNCHARACTERIZED |
LLU|FUN_020349-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
LLU|FUN_020350-T1 | RAN BINDING PROTEIN 9-RELATED |
LLU|FUN_020351-T1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
LLU|FUN_020352-T1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
LLU|FUN_020353-T1 | TRANSLIN-ASSOCIATED FACTOR X-INTERACTING PROTEIN 1 |
LLU|FUN_020354-T1 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS N |
LLU|FUN_020355-T1 | PHOSPHATIDYLINOSITOL GLYCAN, CLASS N |
LLU|FUN_020356-T1 | |
LLU|FUN_020357-T1 | |
LLU|FUN_020358-T1 | |
LLU|FUN_020359-T1 | |
LLU|FUN_020360-T1 | |
LLU|FUN_020361-T1 | APICAL ENDOSOMAL GLYCOPROTEIN PRECURSOR. |
LLU|FUN_020362-T1 | |
LLU|FUN_020363-T1 | |
LLU|FUN_020364-T1 | |
LLU|FUN_020365-T1 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
LLU|FUN_020366-T1 | |
LLU|FUN_020367-T1 | |
LLU|FUN_020368-T1 | |
LLU|FUN_020369-T1 | |
LLU|FUN_020370-T1 | |
LLU|FUN_020371-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_020372-T1 | METABOTROPIC GLUTAMATE RECEPTOR |