About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_020573-T1CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2
LLU|FUN_020574-T1CADHERIN-87A
LLU|FUN_020575-T1
LLU|FUN_020576-T1E3 UBIQUITIN-PROTEIN LIGASE UBR7
LLU|FUN_020577-T1
LLU|FUN_020578-T1
LLU|FUN_020579-T1
LLU|FUN_020580-T1MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB
LLU|FUN_020581-T1RUN AND SH3 DOMAIN CONTAINING
LLU|FUN_020582-T1CARBON CATABOLITE REPRESSOR PROTEIN 4
LLU|FUN_020583-T1PROTEIN PHOSPHATASE INHIBITOR
LLU|FUN_020584-T1DEUBIQUITINATING PROTEIN VCIP135
LLU|FUN_020585-T1DEUBIQUITINATING PROTEIN VCIP135
LLU|FUN_020586-T1CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER
LLU|FUN_020587-T1
LLU|FUN_020588-T1HEME OXYGENASE
LLU|FUN_020589-T1REPETIN
LLU|FUN_020590-T1PEPTIDYLPROLYL ISOMERASE
LLU|FUN_020591-T1ZINC FINGER PROTEIN
LLU|FUN_020592-T1ADAPTER PROTEIN CIKS
LLU|FUN_020593-T1SERINE PROTEASE-RELATED
LLU|FUN_020594-T1
LLU|FUN_020595-T1GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1
LLU|FUN_020596-T1WD40 REPEAT PROTEIN 4
LLU|FUN_020597-T1TRANSCRIPTION FACTOR ONECUT
LLU|FUN_020598-T1
LLU|FUN_020599-T1TRANSCRIPTION FACTOR ONECUT
LLU|FUN_020600-T1SERINE/THREONINE-PROTEIN KINASE 17
LLU|FUN_020601-T1
LLU|FUN_020602-T1PDZ AND LIM DOMAIN PROTEIN ZASP
LLU|FUN_020603-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020604-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020605-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020606-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020607-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020608-T1
LLU|FUN_020609-T1
LLU|FUN_020610-T1
LLU|FUN_020611-T1
LLU|FUN_020612-T1CARBOHYDRATE SULFOTRANSFERASE
LLU|FUN_020613-T1
LLU|FUN_020614-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_020615-T1
LLU|FUN_020616-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_020617-T1DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2
LLU|FUN_020618-T1
LLU|FUN_020619-T1
LLU|FUN_020620-T1UNCHARACTERIZED
LLU|FUN_020621-T1UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN
LLU|FUN_020622-T1TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA
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