Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_020573-T1 | CYTOPLASMIC TRNA 2-THIOLATION PROTEIN 2 |
LLU|FUN_020574-T1 | CADHERIN-87A |
LLU|FUN_020575-T1 | |
LLU|FUN_020576-T1 | E3 UBIQUITIN-PROTEIN LIGASE UBR7 |
LLU|FUN_020577-T1 | |
LLU|FUN_020578-T1 | |
LLU|FUN_020579-T1 | |
LLU|FUN_020580-T1 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
LLU|FUN_020581-T1 | RUN AND SH3 DOMAIN CONTAINING |
LLU|FUN_020582-T1 | CARBON CATABOLITE REPRESSOR PROTEIN 4 |
LLU|FUN_020583-T1 | PROTEIN PHOSPHATASE INHIBITOR |
LLU|FUN_020584-T1 | DEUBIQUITINATING PROTEIN VCIP135 |
LLU|FUN_020585-T1 | DEUBIQUITINATING PROTEIN VCIP135 |
LLU|FUN_020586-T1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
LLU|FUN_020587-T1 | |
LLU|FUN_020588-T1 | HEME OXYGENASE |
LLU|FUN_020589-T1 | REPETIN |
LLU|FUN_020590-T1 | PEPTIDYLPROLYL ISOMERASE |
LLU|FUN_020591-T1 | ZINC FINGER PROTEIN |
LLU|FUN_020592-T1 | ADAPTER PROTEIN CIKS |
LLU|FUN_020593-T1 | SERINE PROTEASE-RELATED |
LLU|FUN_020594-T1 | |
LLU|FUN_020595-T1 | GLIOMA TUMOR SUPPRESSOR CANDIDATE REGION GENE 1 |
LLU|FUN_020596-T1 | WD40 REPEAT PROTEIN 4 |
LLU|FUN_020597-T1 | TRANSCRIPTION FACTOR ONECUT |
LLU|FUN_020598-T1 | |
LLU|FUN_020599-T1 | TRANSCRIPTION FACTOR ONECUT |
LLU|FUN_020600-T1 | SERINE/THREONINE-PROTEIN KINASE 17 |
LLU|FUN_020601-T1 | |
LLU|FUN_020602-T1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
LLU|FUN_020603-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020604-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020605-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020606-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020607-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020608-T1 | |
LLU|FUN_020609-T1 | |
LLU|FUN_020610-T1 | |
LLU|FUN_020611-T1 | |
LLU|FUN_020612-T1 | CARBOHYDRATE SULFOTRANSFERASE |
LLU|FUN_020613-T1 | |
LLU|FUN_020614-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_020615-T1 | |
LLU|FUN_020616-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_020617-T1 | DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 |
LLU|FUN_020618-T1 | |
LLU|FUN_020619-T1 | |
LLU|FUN_020620-T1 | UNCHARACTERIZED |
LLU|FUN_020621-T1 | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN |
LLU|FUN_020622-T1 | TRANSMEMBRANE PROTEIN INDUCED BY TUMOR NECROSIS FACTOR ALPHA |