Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022034-T1 | PX DOMAIN-CONTAINING PROTEIN |
LLU|FUN_022035-T1 | MICRO-RNA BINDING ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7 |
LLU|FUN_022036-T1 | |
LLU|FUN_022037-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 154 |
LLU|FUN_022038-T1 | |
LLU|FUN_022039-T1 | |
LLU|FUN_022040-T1 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 |
LLU|FUN_022041-T1 | MITOTIC SPINDLE ASSEMBLY CHECKPOINT PROTEIN MAD1 MITOTIC ARREST DEFICIENT-LIKE PROTEIN 1 |
LLU|FUN_022042-T1 | ACTIVATING TRANSCRIPTION FACTOR 7 INTERACTING PROTEIN |
LLU|FUN_022043-T1 | |
LLU|FUN_022044-T1 | GLUTAMATE-RICH WD REPEAT-CONTAINING PROTEIN 1 |
LLU|FUN_022045-T1 | BRAIN PROTEIN I3 |
LLU|FUN_022046-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
LLU|FUN_022047-T1 | |
LLU|FUN_022048-T1 | |
LLU|FUN_022049-T1 | |
LLU|FUN_022050-T1 | |
LLU|FUN_022051-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
LLU|FUN_022052-T1 | - |
LLU|FUN_022053-T1 | AMINOACYL TRNA SYNTHASE COMPLEX-INTERACTING MULTIFUNCTIONAL PROTEIN |
LLU|FUN_022054-T1 | UBIQUITINATION FACTOR E4 |
LLU|FUN_022055-T1 | UNCHARACTERIZED |
LLU|FUN_022056-T1 | COLLAGEN ALPHA |
LLU|FUN_022057-T1 | DEOXYNUCLEOSIDE TRIPHOSPHATE TRIPHOSPHOHYDROLASE |
LLU|FUN_022058-T1 | MUCIN 4-RELATED |
LLU|FUN_022059-T1 | |
LLU|FUN_022060-T1 | |
LLU|FUN_022061-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_022062-T1 | |
LLU|FUN_022063-T1 | |
LLU|FUN_022064-T1 | |
LLU|FUN_022065-T1 | |
LLU|FUN_022066-T1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
LLU|FUN_022067-T1 | |
LLU|FUN_022068-T1 | |
LLU|FUN_022069-T1 | PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_5G03330)-RELATED |
LLU|FUN_022070-T1 | |
LLU|FUN_022071-T1 | |
LLU|FUN_022072-T1 | UNCHARACTERIZED |
LLU|FUN_022073-T1 | LEUCOKININ RECEPTOR-RELATED |
LLU|FUN_022074-T1 | |
LLU|FUN_022075-T1 | |
LLU|FUN_022076-T1 | BAP28 |
LLU|FUN_022077-T1 | RETICULOCALBIN |
LLU|FUN_022078-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
LLU|FUN_022079-T1 | PAX6 NEIGHBOR PROTEIN PAXNEB |
LLU|FUN_022080-T1 | F-BOX ONLY PROTEIN 47 |
LLU|FUN_022081-T1 | F-BOX ONLY PROTEIN 47 |
LLU|FUN_022082-T1 | SERINE/THREONINE-PROTEIN KINASE |
LLU|FUN_022083-T1 |