About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_022084-T1
LLU|FUN_022085-T1TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED
LLU|FUN_022086-T1
LLU|FUN_022087-T1GH04784P
LLU|FUN_022088-T1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_022089-T1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_022090-T1
LLU|FUN_022091-T1ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_022092-T1
LLU|FUN_022093-T1
LLU|FUN_022094-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
LLU|FUN_022095-T1PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
LLU|FUN_022096-T1
LLU|FUN_022097-T1
LLU|FUN_022098-T1
LLU|FUN_022099-T1
LLU|FUN_022100-T1CGI-141-RELATED/LIPASE CONTAINING PROTEIN
LLU|FUN_022101-T1
LLU|FUN_022102-T1DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER
LLU|FUN_022103-T1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
LLU|FUN_022104-T1LAR INTERACTING PROTEIN LIP -RELATED PROTEIN
LLU|FUN_022105-T1UNCHARACTERIZED
LLU|FUN_022106-T1
LLU|FUN_022107-T1WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED
LLU|FUN_022108-T1CAMK FAMILY PROTEIN KINASE
LLU|FUN_022109-T1CAMK FAMILY PROTEIN KINASE
LLU|FUN_022110-T1
LLU|FUN_022112-T1
LLU|FUN_022113-T1EGF-LIKE-DOMAIN, MULTIPLE 7, 8
LLU|FUN_022114-T1
LLU|FUN_022119-T1CYTOKINE RECEPTOR
LLU|FUN_022120-T1
LLU|FUN_022121-T1
LLU|FUN_022122-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_022123-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_022124-T1GLYCOSYLTRANSFERASE-RELATED
LLU|FUN_022125-T1GLYCOSYLTRANSFERASE
LLU|FUN_022126-T1
LLU|FUN_022127-T1
LLU|FUN_022128-T1BLR7054 PROTEIN
LLU|FUN_022129-T1RAS-RELATED GTP BINDING RAG/GTR YEAST
LLU|FUN_022130-T1FATTY ACID BINDING PROTEIN
LLU|FUN_022131-T1
LLU|FUN_022132-T1FATTY ACID BINDING PROTEIN
LLU|FUN_022133-T1
LLU|FUN_022134-T1CASPASE
LLU|FUN_022135-T1TIM23
LLU|FUN_022136-T1
LLU|FUN_022137-T1CYSTATHIONINE BETA-SYNTHASE
LLU|FUN_022138-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
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