Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022084-T1 | |
LLU|FUN_022085-T1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 11-RELATED |
LLU|FUN_022086-T1 | |
LLU|FUN_022087-T1 | GH04784P |
LLU|FUN_022088-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_022089-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_022090-T1 | |
LLU|FUN_022091-T1 | ANKYRIN REPEAT AND STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_022092-T1 | |
LLU|FUN_022093-T1 | |
LLU|FUN_022094-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
LLU|FUN_022095-T1 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
LLU|FUN_022096-T1 | |
LLU|FUN_022097-T1 | |
LLU|FUN_022098-T1 | |
LLU|FUN_022099-T1 | |
LLU|FUN_022100-T1 | CGI-141-RELATED/LIPASE CONTAINING PROTEIN |
LLU|FUN_022101-T1 | |
LLU|FUN_022102-T1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
LLU|FUN_022103-T1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
LLU|FUN_022104-T1 | LAR INTERACTING PROTEIN LIP -RELATED PROTEIN |
LLU|FUN_022105-T1 | UNCHARACTERIZED |
LLU|FUN_022106-T1 | |
LLU|FUN_022107-T1 | WD-REPEAT PROTEIN INTERACTING WITH PHOSPHOINOSIDES WIPI -RELATED |
LLU|FUN_022108-T1 | CAMK FAMILY PROTEIN KINASE |
LLU|FUN_022109-T1 | CAMK FAMILY PROTEIN KINASE |
LLU|FUN_022110-T1 | |
LLU|FUN_022112-T1 | |
LLU|FUN_022113-T1 | EGF-LIKE-DOMAIN, MULTIPLE 7, 8 |
LLU|FUN_022114-T1 | |
LLU|FUN_022119-T1 | CYTOKINE RECEPTOR |
LLU|FUN_022120-T1 | |
LLU|FUN_022121-T1 | |
LLU|FUN_022122-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
LLU|FUN_022123-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
LLU|FUN_022124-T1 | GLYCOSYLTRANSFERASE-RELATED |
LLU|FUN_022125-T1 | GLYCOSYLTRANSFERASE |
LLU|FUN_022126-T1 | |
LLU|FUN_022127-T1 | |
LLU|FUN_022128-T1 | BLR7054 PROTEIN |
LLU|FUN_022129-T1 | RAS-RELATED GTP BINDING RAG/GTR YEAST |
LLU|FUN_022130-T1 | FATTY ACID BINDING PROTEIN |
LLU|FUN_022131-T1 | |
LLU|FUN_022132-T1 | FATTY ACID BINDING PROTEIN |
LLU|FUN_022133-T1 | |
LLU|FUN_022134-T1 | CASPASE |
LLU|FUN_022135-T1 | TIM23 |
LLU|FUN_022136-T1 | |
LLU|FUN_022137-T1 | CYSTATHIONINE BETA-SYNTHASE |
LLU|FUN_022138-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |