Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022690-T1 | |
LLU|FUN_022691-T1 | |
LLU|FUN_022692-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022693-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022694-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022695-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022696-T1 | |
LLU|FUN_022697-T1 | |
LLU|FUN_022698-T1 | |
LLU|FUN_022699-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
LLU|FUN_022700-T1 | |
LLU|FUN_022701-T1 | SERINE INCORPORATOR |
LLU|FUN_022702-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022703-T1 | SERINE INCORPORATOR |
LLU|FUN_022704-T1 | |
LLU|FUN_022705-T1 | |
LLU|FUN_022706-T1 | GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7 |
LLU|FUN_022707-T1 | ENVOPLAKIN |
LLU|FUN_022708-T1 | |
LLU|FUN_022709-T1 | |
LLU|FUN_022710-T1 | |
LLU|FUN_022711-T1 | |
LLU|FUN_022712-T1 | |
LLU|FUN_022713-T1 | |
LLU|FUN_022714-T1 | UV RADIATION RESISTANCE-ASSOCIATED GENE PROTEIN |
LLU|FUN_022715-T1 | |
LLU|FUN_022716-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
LLU|FUN_022717-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
LLU|FUN_022718-T1 | GUANYLYL CYCLASE |
LLU|FUN_022719-T1 | GUANYLYL CYCLASE |
LLU|FUN_022720-T1 | |
LLU|FUN_022721-T1 | |
LLU|FUN_022722-T1 | |
LLU|FUN_022723-T1 | |
LLU|FUN_022724-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_022725-T1 | |
LLU|FUN_022726-T1 | UNCHARACTERIZED |
LLU|FUN_022727-T1 | |
LLU|FUN_022728-T1 | |
LLU|FUN_022729-T1 | |
LLU|FUN_022730-T1 | NADPH OXIDASE |
LLU|FUN_022731-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_022732-T1 | |
LLU|FUN_022733-T1 | REGULATING SYNAPTIC MEMBRANE EXOCYTOSIS PROTEIN |
LLU|FUN_022734-T1 | SERINE-THREONINE PROTEIN KINASE |
LLU|FUN_022735-T1 | |
LLU|FUN_022736-T1 | ACETYL-COENZYME A SYNTHETASE |
LLU|FUN_022737-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022738-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022739-T1 |