Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022740-T1 | ZINC FINGER PROTEIN 142 |
LLU|FUN_022741-T1 | EUKARYOTIC TRANSLATION ELONGATION FACTOR 1 EPSILON-1 |
LLU|FUN_022742-T1 | NUCLEAR FACTOR I |
LLU|FUN_022743-T1 | |
LLU|FUN_022744-T1 | |
LLU|FUN_022745-T1 | - |
LLU|FUN_022746-T1 | |
LLU|FUN_022747-T1 | |
LLU|FUN_022748-T1 | |
LLU|FUN_022749-T1 | CALPAIN, SMALL SUBUNIT 1 A-RELATED |
LLU|FUN_022750-T1 | |
LLU|FUN_022751-T1 | |
LLU|FUN_022752-T1 | HISTONE H2B |
LLU|FUN_022753-T1 | |
LLU|FUN_022754-T1 | |
LLU|FUN_022755-T1 | |
LLU|FUN_022756-T1 | |
LLU|FUN_022757-T1 | OVOCHYMASE-RELATED |
LLU|FUN_022758-T1 | OVOCHYMASE-RELATED |
LLU|FUN_022759-T1 | ACROSIN-RELATED |
LLU|FUN_022760-T1 | OVOCHYMASE-RELATED |
LLU|FUN_022761-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_022762-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_022763-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_022764-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_022765-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_022766-T1 | GMP REDUCTASE |
LLU|FUN_022767-T1 | NADH DEHYDROGENASE UBIQUINONE FLAVOPROTEIN 2, MITOCHONDRIAL |
LLU|FUN_022768-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 60 |
LLU|FUN_022769-T1 | |
LLU|FUN_022770-T1 | |
LLU|FUN_022771-T1 | RESPIRATORY NITRATE REDUCTASE |
LLU|FUN_022772-T1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
LLU|FUN_022773-T1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
LLU|FUN_022774-T1 | |
LLU|FUN_022775-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
LLU|FUN_022776-T1 | EF-HAND AND COILED-COIL DOMAIN-CONTAINING FAMILY MEMBER |
LLU|FUN_022777-T1 | |
LLU|FUN_022778-T1 | |
LLU|FUN_022779-T1 | |
LLU|FUN_022780-T1 | |
LLU|FUN_022781-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022782-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_022783-T1 | |
LLU|FUN_022784-T1 | |
LLU|FUN_022785-T1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
LLU|FUN_022786-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
LLU|FUN_022787-T1 | SYNAPTIC ADHESION-LIKE MOLECULE SALM |
LLU|FUN_022788-T1 | |
LLU|FUN_022789-T1 | PROPERDIN |