Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_022790-T1 | |
LLU|FUN_022791-T1 | |
LLU|FUN_022792-T1 | TRANSMEMBRANE PROTEIN 246 |
LLU|FUN_022793-T1 | UNCHARACTERIZED |
LLU|FUN_022794-T1 | |
LLU|FUN_022795-T1 | |
LLU|FUN_022796-T1 | |
LLU|FUN_022797-T1 | |
LLU|FUN_022798-T1 | |
LLU|FUN_022799-T1 | |
LLU|FUN_022800-T1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_022801-T1 | GTP-BINDING PROTEIN-RELATED |
LLU|FUN_022802-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
LLU|FUN_022803-T1 | RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED |
LLU|FUN_022804-T1 | POLY A POLYMERASE CID PAP -RELATED |
LLU|FUN_022805-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_022806-T1 | BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 6 |
LLU|FUN_022807-T1 | METALLOPROTEASE TLDD |
LLU|FUN_022808-T1 | |
LLU|FUN_022809-T1 | TENASCIN |
LLU|FUN_022810-T1 | CYTOKINE RECEPTOR |
LLU|FUN_022811-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
LLU|FUN_022812-T1 | ENDO-ALPHA-1,2-MANNOSIDASE |
LLU|FUN_022813-T1 | RNA PROCESSING PROTEIN LD23810P |
LLU|FUN_022814-T1 | UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN |
LLU|FUN_022815-T1 | UBIQUITIN LIGASE PROTEIN PHF9 FANCONI ANEMIA GROUP L PROTEIN |
LLU|FUN_022816-T1 | CASEIN KINASE-RELATED |
LLU|FUN_022817-T1 | CASEIN KINASE-RELATED |
LLU|FUN_022818-T1 | |
LLU|FUN_022819-T1 | |
LLU|FUN_022820-T1 | STI2 PROTEIN-RELATED |
LLU|FUN_022821-T1 | |
LLU|FUN_022822-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_022823-T1 | OSJNBA0004B13.7 PROTEIN |
LLU|FUN_022824-T1 | OSJNBA0004B13.7 PROTEIN |
LLU|FUN_022825-T1 | DOLICHYL GLYCOSYLTRANSFERASE |
LLU|FUN_022826-T1 | CARBOXYPEPTIDASE REGULATORY REGION-CONTAINING |
LLU|FUN_022827-T1 | |
LLU|FUN_022828-T1 | |
LLU|FUN_022829-T1 | |
LLU|FUN_022830-T1 | |
LLU|FUN_022831-T1 | |
LLU|FUN_022832-T1 | |
LLU|FUN_022833-T1 | |
LLU|FUN_022834-T1 | |
LLU|FUN_022835-T1 | |
LLU|FUN_022836-T1 | |
LLU|FUN_022837-T1 | |
LLU|FUN_022838-T1 | |
LLU|FUN_022839-T1 |