The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama28334 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama28335 | SERINE/THREONINE-PROTEIN KINASE |
Ama28336 | IMMUNOGLOBULIN |
Ama28337 | IMMUNOGLOBULIN |
Ama28353 | CHITIN SYNTHASE |
Ama28354 | |
Ama28355 | |
Ama28356 | UNCHARACTERIZED |
Ama28357 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
Ama28358 | UPF0428 PROTEIN CXORF56 |
Ama28359 | |
Ama28360 | ANION EXCHANGE PROTEIN |
Ama28361 | ANION EXCHANGE PROTEIN |
Ama28362 | HEH2P |
Ama28363 | PUTATIVE-RELATED |
Ama28364 | |
Ama28366 | |
Ama28367 | UNCHARACTERIZED |
Ama28368 | ARYLACETAMIDE DEACETYLASE |
Ama28369 | YIPPEE DOMAIN-CONTAINING PROTEIN |
Ama28370 | VACUOLAR PROTEIN SORTING VPS41 |
Ama28372 | DNA TOPOISOMERASE/GYRASE |
Ama28374 | UBIQUITIN-CONJUGATING ENZYME E2 |
Ama28375 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama28376 | AP ENDONUCLEASE |
Ama28377 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama28380 | |
Ama28381 | |
Ama28382 | |
Ama28384 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
Ama28385 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama28386 | |
Ama28387 | |
Ama28389 | |
Ama28390 | DNA POLYMERASE |
Ama28391 | DNA POLYMERASE |
Ama28393 | |
Ama28394 | HISTONE H3.2 |
Ama28395 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama28396 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama28397 | |
Ama283_5db7b01a | |
Ama28406 | |
Ama28407 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama28408 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama28410 | |
Ama28411 | |
Ama28412 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama28413 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN-RELATED |
Ama28416 | ALPHA-CATULIN |