The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama02621 | RAB GDP/GTP EXCHANGE FACTOR |
Ama02622 | |
Ama02623 | |
Ama02624 | SMG-7 SUPPRESSOR WITH MORPHOLOGICAL EFFECT ON GENITALIA PROTEIN 7 |
Ama02625 | |
Ama02626 | THAP DOMAIN PROTEIN |
Ama02627 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama02630 | |
Ama02632 | 2-OXOGLUTARATE DEHYDROGENASE |
Ama02634 | PEFLIN |
Ama02635 | ACROSIN-RELATED |
Ama02636 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama02637 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
Ama02638 | CRUMBS FAMILY MEMBER |
Ama02641 | |
Ama02646 | |
Ama02647 | HL07962P-RELATED |
Ama02649 | LD36006P |
Ama02651 | |
Ama02653 | RIBOSOMAL S SUBUNIT |
Ama02654 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama02657 | UPF0602 PROTEIN C4ORF47 |
Ama02658 | |
Ama02659 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama02660 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama02661 | |
Ama02662 | - |
Ama02663 | LEUCINE-RICH REPEAT-CONTAINING |
Ama02664 | CELL DIVISION PROTEIN KINASE |
Ama02665 | PEPTIDE CHAIN RELEASE FACTOR |
Ama02666 | HISTONE H1 |
Ama02668 | UNCHARACTERIZED |
Ama02669 | OXIDOREDUCTASE-LIKE DOMAIN-CONTAINING PROTEIN 1 |
Ama02670 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama02671 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama02672 | |
Ama02673 | - |
Ama02674 | AGAP005574-PA |
Ama02675 | |
Ama02676 | |
Ama02678 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
Ama02679 | |
Ama02680 | VILLIN |
Ama02681 | UBIQUITINATION FACTOR E4 |
Ama02683 | |
Ama02684 | GENE, 17359-RELATED |
Ama02686 | ALPHA-MANNOSIDASE |
Ama02691 | AGAP001705-PA |
Ama02692 | |
Ama02695 |