The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama23281 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Ama23282 | TRANSPOSON |
| Ama23283 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama23284 | |
| Ama23285 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama23286 | |
| Ama23287 | |
| Ama23288 | BCL-2 RELATED |
| Ama23290 | GLYCOPROTEIN HORMONE RECEPTOR |
| Ama23294 | |
| Ama23295 | PEPTIDASE |
| Ama23296 | CONDENSIN-2 COMPLEX SUBUNIT G2 |
| Ama23297 | PUTATIVE-RELATED |
| Ama23298 | |
| Ama23299 | |
| Ama23300 | ZGC:195170 |
| Ama23301 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama23302 | |
| Ama23303 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama23304 | |
| Ama23305 | MYB PROTEIN-RELATED |
| Ama23306 | |
| Ama23307 | |
| Ama23308 | |
| Ama23312 | PUTATIVE-RELATED |
| Ama23314 | NG5 |
| Ama23315 | |
| Ama23316 | FIBROUS SHEATH INTERACTING PROTEIN 2 |
| Ama23317 | |
| Ama23318 | |
| Ama23320 | |
| Ama23321 | NURIM |
| Ama23322 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE |
| Ama23323 | - |
| Ama23324 | PUTATIVE-RELATED |
| Ama23325 | PROTEIN VASCULAR ASSOCIATED DEATH 1, CHLOROPLASTIC |
| Ama23326 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 8 |
| Ama23327 | UNCHARACTERIZED |
| Ama23328 | |
| Ama23329 | |
| Ama23330 | GOLGI-ASSOCIATED PDZ AND COILED-COIL MOTIF-CONTAINING |
| Ama23331 | |
| Ama23332 | |
| Ama23333 | PUTATIVE-RELATED |
| Ama23338 | COPPER AMINE OXIDASE |
| Ama23339 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama23340 | |
| Ama23341 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Ama23345 | SOLUTE CARRIER FAMILY 40 MEMBER |
| Ama23346 | NUCLEAR PORE GLYCOPROTEIN P62-RELATED |
