The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama23219 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Ama23220 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama23221 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama23222 | |
| Ama23223 | - |
| Ama23224 | GABA-B RECEPTOR |
| Ama23225 | |
| Ama23226 | CALPAIN |
| Ama23227 | |
| Ama23228 | |
| Ama23229 | IMPORTIN-7, 8, 11 |
| Ama23230 | SYNAPTOBREVIN FAMILY MEMBER |
| Ama23231 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| Ama23232 | |
| Ama23233 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama23235 | |
| Ama23240 | TRANSCRIPTION INTERMEDIARY FACTOR |
| Ama23241 | GAMMA GLUTAMYL TRANSPEPTIDASE |
| Ama23242 | |
| Ama23243 | |
| Ama23244 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Ama23245 | TELOMERIC REPEAT-BINDING FACTOR 1 TERF1 |
| Ama23246 | |
| Ama23247 | |
| Ama23248 | |
| Ama23252 | |
| Ama23253 | |
| Ama23254 | NOTCH LIGAND FAMILY MEMBER |
| Ama23255 | CRUMBS FAMILY MEMBER |
| Ama23257 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Ama23259 | |
| Ama23260 | NUCLEAR HORMONE RECEPTOR |
| Ama23261 | |
| Ama23262 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama23263 | MONOCARBOXYLATE TRANSPORTER |
| Ama23264 | |
| Ama23265 | MONOCARBOXYLATE TRANSPORTER |
| Ama23266 | REVERSE TRANSCRIPTASES |
| Ama23267 | MONOCARBOXYLATE TRANSPORTER |
| Ama23268 | ECDYSONE-INDUCIBLE GENE E1, ISOFORM A |
| Ama23269 | |
| Ama23272 | |
| Ama23273 | |
| Ama23274 | |
| Ama23275 | |
| Ama23276 | CAMK FAMILY PROTEIN KINASE |
| Ama23277 | |
| Ama23278 | |
| Ama23279 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama23280 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
