About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_014465-T1
LLU|FUN_014466-T1
LLU|FUN_014467-T1
LLU|FUN_014468-T1
LLU|FUN_014469-T1
LLU|FUN_014470-T1PROTEIN KINASE PKN/PRK1, EFFECTOR
LLU|FUN_014471-T1
LLU|FUN_014472-T1
LLU|FUN_014473-T1
LLU|FUN_014474-T1
LLU|FUN_014475-T1
LLU|FUN_014476-T1
LLU|FUN_014477-T1PROTEIN CBG11839-RELATED
LLU|FUN_014478-T1
LLU|FUN_014479-T1COLLAGEN ALPHA
LLU|FUN_014480-T1
LLU|FUN_014481-T1
LLU|FUN_014482-T1
LLU|FUN_014483-T1
LLU|FUN_014484-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_014485-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_014486-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_014487-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_014488-T1SERINE/THREONINE-PROTEIN KINASE
LLU|FUN_014489-T1SUPERKILLER 3 PROTEIN-RELATED
LLU|FUN_014490-T1HELIX LOOP HELIX PROTEIN 21-RELATED
LLU|FUN_014491-T1JTB PROTEIN-RELATED
LLU|FUN_014492-T1CYTOCHROME C OXIDASE POLYPEPTIDE
LLU|FUN_014493-T1POLY ADP-RIBOSE POLYMERASE FAMILY, MEMBER PARP
LLU|FUN_014494-T1GLUCOSE REPRESSIBLE PROTEIN MAK10
LLU|FUN_014495-T1SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1
LLU|FUN_014496-T1
LLU|FUN_014497-T1
LLU|FUN_014498-T1
LLU|FUN_014499-T1SELENOPROTEIN O
LLU|FUN_014500-T1BOLA-LIKE PROTEIN-RELATED
LLU|FUN_014501-T1TWO PORE CALCIUM CHANNEL PROTEIN 1
LLU|FUN_014502-T1IQ DOMAIN-CONTAINING PROTEIN D
LLU|FUN_014503-T1
LLU|FUN_014504-T1DCTP PYROPHOSPHATASE 1
LLU|FUN_014505-T1NADH DEHYDROGENASE UBIQUINONE IRON-SULFUR PROTEIN 8, MITOCHONDRIAL
LLU|FUN_014506-T1SOLUTE CARRIER FAMILY 22 MEMBER
LLU|FUN_014507-T1
LLU|FUN_014508-T1SOLUTE CARRIER FAMILY 22 MEMBER
LLU|FUN_014509-T1
LLU|FUN_014510-T1
LLU|FUN_014511-T1
LLU|FUN_014512-T1
LLU|FUN_014513-T1
LLU|FUN_014514-T1BLEOMYCIN HYDROLASE
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