Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_014515-T1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
LLU|FUN_014516-T1 | FRUCTOSAMINE 3 KINASE-RELATED PROTEIN |
LLU|FUN_014517-T1 | TRANSMEMBRANE AND COILED-COIL DOMAIN-CONTAINING PROTEIN 6 TMCO6 |
LLU|FUN_014518-T1 | GLYCOGEN PHOSPHORYLASE |
LLU|FUN_014519-T1 | CCAAT-BINDING FACTOR-RELATED |
LLU|FUN_014520-T1 | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED |
LLU|FUN_014521-T1 | |
LLU|FUN_014522-T1 | |
LLU|FUN_014523-T1 | FIBROUS SHEATH INTERACTING PROTEIN 1 |
LLU|FUN_014524-T1 | MINA53 MYC INDUCED NUCLEAR ANTIGEN |
LLU|FUN_014525-T1 | UNCHARACTERIZED |
LLU|FUN_014526-T1 | DISCS LARGE |
LLU|FUN_014527-T1 | BECLIN 1-ASSOCIATED AUTOPHAGY-RELATED KEY REGULATOR |
LLU|FUN_014528-T1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S18 |
LLU|FUN_014529-T1 | 30S RIBOSOMAL PROTEIN S18 |
LLU|FUN_014530-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG |
LLU|FUN_014531-T1 | |
LLU|FUN_014532-T1 | N-ALPHA-ACETYLTRANSFERASE 30 |
LLU|FUN_014533-T1 | WD REPEAT-CONTAINING PROTEIN 81 |
LLU|FUN_014534-T1 | |
LLU|FUN_014535-T1 | |
LLU|FUN_014536-T1 | |
LLU|FUN_014537-T1 | WD REPEAT-CONTAINING PROTEIN 81 |
LLU|FUN_014538-T1 | COFILIN-RELATED |
LLU|FUN_014539-T1 | COFILIN-RELATED |
LLU|FUN_014540-T1 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
LLU|FUN_014541-T1 | B30.2/SPRY DOMAIN-CONTAINING PROTEIN |
LLU|FUN_014542-T1 | TRANSMEMBRANE PROTEIN 179 |
LLU|FUN_014543-T1 | |
LLU|FUN_014544-T1 | TRANSMEMBRANE PROTEIN 179 |
LLU|FUN_014545-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_014546-T1 | |
LLU|FUN_014547-T1 | |
LLU|FUN_014548-T1 | |
LLU|FUN_014549-T1 | |
LLU|FUN_014550-T1 | |
LLU|FUN_014551-T1 | |
LLU|FUN_014552-T1 | |
LLU|FUN_014553-T1 | NEPHRIN |
LLU|FUN_014554-T1 | |
LLU|FUN_014555-T1 | |
LLU|FUN_014556-T1 | NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE |
LLU|FUN_014557-T1 | |
LLU|FUN_014558-T1 | |
LLU|FUN_014559-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_014560-T1 | |
LLU|FUN_014561-T1 | |
LLU|FUN_014562-T1 | UNCHARACTERIZED |
LLU|FUN_014563-T1 | |
LLU|FUN_014564-T1 |