Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_014415-T1 | |
LLU|FUN_014416-T1 | |
LLU|FUN_014417-T1 | |
LLU|FUN_014418-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_014419-T1 | TP53-REGULATED INHIBITOR OF APOPTOSIS 1 |
LLU|FUN_014420-T1 | BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 |
LLU|FUN_014421-T1 | SUPPRESSOR OF TY 4 |
LLU|FUN_014422-T1 | SPERMATOGENESIS-ASSOCIATED PROTEIN 22 |
LLU|FUN_014423-T1 | MUCIN 4-RELATED |
LLU|FUN_014424-T1 | |
LLU|FUN_014425-T1 | |
LLU|FUN_014426-T1 | |
LLU|FUN_014427-T1 | COPROPORPHYRINIGEN III OXIDASE |
LLU|FUN_014428-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_014429-T1 | |
LLU|FUN_014430-T1 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
LLU|FUN_014431-T1 | |
LLU|FUN_014432-T1 | |
LLU|FUN_014433-T1 | |
LLU|FUN_014434-T1 | |
LLU|FUN_014435-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
LLU|FUN_014436-T1 | |
LLU|FUN_014437-T1 | |
LLU|FUN_014438-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
LLU|FUN_014439-T1 | |
LLU|FUN_014440-T1 | |
LLU|FUN_014441-T1 | |
LLU|FUN_014442-T1 | |
LLU|FUN_014443-T1 | |
LLU|FUN_014444-T1 | HOMEOBOX PROTEIN BARH-LIKE |
LLU|FUN_014445-T1 | UNCHARACTERIZED |
LLU|FUN_014446-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_014447-T1 | |
LLU|FUN_014448-T1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
LLU|FUN_014449-T1 | |
LLU|FUN_014450-T1 | SID1 TRANSMEMBRANE FAMILY MEMEBER |
LLU|FUN_014451-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 84 |
LLU|FUN_014452-T1 | |
LLU|FUN_014453-T1 | |
LLU|FUN_014454-T1 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B |
LLU|FUN_014455-T1 | |
LLU|FUN_014456-T1 | |
LLU|FUN_014457-T1 | LUNG ADENOMA SUSCEPTIBILITY 1-RELATED |
LLU|FUN_014458-T1 | NADH-UBIQUINONE OXIDOREDUCTASE 39 KDA SUBUNIT-RELATED |
LLU|FUN_014459-T1 | THIOREDOXIN-LIKE PROTEN 4A, 4B |
LLU|FUN_014460-T1 | LD18447P |
LLU|FUN_014461-T1 | |
LLU|FUN_014462-T1 | |
LLU|FUN_014463-T1 | PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN |
LLU|FUN_014464-T1 |