Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_014059-T1 | E3 UBIQUITIN-PROTEIN LIGASE SIAH2 |
LLU|FUN_014060-T1 | PROTEIN C11ORF74 |
LLU|FUN_014061-T1 | MULTICOPPER OXIDASE-RELATED |
LLU|FUN_014062-T1 | MULTICOPPER OXIDASE-RELATED |
LLU|FUN_014063-T1 | |
LLU|FUN_014064-T1 | |
LLU|FUN_014065-T1 | |
LLU|FUN_014066-T1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
LLU|FUN_014067-T1 | |
LLU|FUN_014068-T1 | |
LLU|FUN_014069-T1 | MUCIN-17 |
LLU|FUN_014070-T1 | |
LLU|FUN_014071-T1 | - |
LLU|FUN_014072-T1 | |
LLU|FUN_014073-T1 | |
LLU|FUN_014074-T1 | |
LLU|FUN_014075-T1 | |
LLU|FUN_014076-T1 | |
LLU|FUN_014077-T1 | TRANSMEMBRANE CHANNEL-RELATED |
LLU|FUN_014078-T1 | |
LLU|FUN_014079-T1 | |
LLU|FUN_014080-T1 | |
LLU|FUN_014081-T1 | |
LLU|FUN_014082-T1 | GLYCOSYLTRANSFERASE-LIKE 1 |
LLU|FUN_014083-T1 | |
LLU|FUN_014084-T1 | |
LLU|FUN_014085-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_014086-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_014087-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_014088-T1 | INHIBITOR OF APOPTOSIS |
LLU|FUN_014089-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_014090-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_014091-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_014092-T1 | MACROGLOBULIN / COMPLEMENT |
LLU|FUN_014093-T1 | MACROGLOBULIN / COMPLEMENT |
LLU|FUN_014094-T1 | UNCHARACTERIZED |
LLU|FUN_014095-T1 | ENDOPLASMIC RETICULUM PROTEIN ERP29 |
LLU|FUN_014096-T1 | |
LLU|FUN_014097-T1 | |
LLU|FUN_014098-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
LLU|FUN_014099-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_014100-T1 | CADHERIN-87A |
LLU|FUN_014101-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_014102-T1 | |
LLU|FUN_014103-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
LLU|FUN_014104-T1 | RENTINAL DEGENERATION 3-LIKE |
LLU|FUN_014105-T1 | SI:CH211-262H13.3-RELATED-RELATED |
LLU|FUN_014106-T1 | NADH-UBIQUINONE OXIDOREDUCTASE SUBUNIT B17.2 |
LLU|FUN_014107-T1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_014108-T1 | CALCIUM-DEPENDENT SECRETION ACTIVATOR |