Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_013751-T1 | |
LLU|FUN_013752-T1 | |
LLU|FUN_013753-T1 | PROMININ PROM PROTEIN |
LLU|FUN_013754-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
LLU|FUN_013755-T1 | SORTING NEXIN |
LLU|FUN_013756-T1 | SORTING NEXIN |
LLU|FUN_013757-T1 | GENE, 17359-RELATED |
LLU|FUN_013758-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
LLU|FUN_013759-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
LLU|FUN_013760-T1 | DEATH DOMAIN-CONTAINING PROTEIN CRADD |
LLU|FUN_013761-T1 | |
LLU|FUN_013762-T1 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
LLU|FUN_013763-T1 | MEMBRANE-ANCHORED JUNCTION PROTEIN MAJIN |
LLU|FUN_013764-T1 | |
LLU|FUN_013765-T1 | ZINC FINGER PROTEIN |
LLU|FUN_013766-T1 | 6-PHOSPHOGLUCONATE DEHYDROGENASE |
LLU|FUN_013767-T1 | POLYCOMB GROUP PROTEIN |
LLU|FUN_013768-T1 | GLR0591 PROTEIN |
LLU|FUN_013769-T1 | |
LLU|FUN_013770-T1 | |
LLU|FUN_013771-T1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
LLU|FUN_013772-T1 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
LLU|FUN_013773-T1 | PEPTIDASE |
LLU|FUN_013774-T1 | PROTEIN PHOSPHATASE |
LLU|FUN_013775-T1 | |
LLU|FUN_013776-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
LLU|FUN_013777-T1 | |
LLU|FUN_013778-T1 | ZINC FINGER PROTEIN |
LLU|FUN_013779-T1 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
LLU|FUN_013780-T1 | ZINC FINGER PROTEIN |
LLU|FUN_013781-T1 | UNCHARACTERIZED |
LLU|FUN_013782-T1 | TRANSCRIPTION FACTOR 19 |
LLU|FUN_013783-T1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
LLU|FUN_013784-T1 | SEGMENT POLARITY PROTEIN DISHEVELLED |
LLU|FUN_013785-T1 | |
LLU|FUN_013786-T1 | |
LLU|FUN_013787-T1 | |
LLU|FUN_013788-T1 | |
LLU|FUN_013789-T1 | RIBOSOMAL PROTEIN S6 KINASE |
LLU|FUN_013790-T1 | F-ACTIN-CAPPING PROTEIN SUBUNIT BETA |
LLU|FUN_013791-T1 | SPERMIDINE/SPERMINE SYNTHASE |
LLU|FUN_013792-T1 | |
LLU|FUN_013793-T1 | MOLYBDOPTERIN COFACTOR SULFURASE MOSC |
LLU|FUN_013794-T1 | |
LLU|FUN_013795-T1 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
LLU|FUN_013796-T1 | |
LLU|FUN_013797-T1 | UNCHARACTERIZED |
LLU|FUN_013798-T1 | |
LLU|FUN_013799-T1 | |
LLU|FUN_013800-T1 |