About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_013551-T1HISTIDINE-RICH GLYCOPROTEIN
LLU|FUN_013552-T1UBIQUITIN-ACTIVATING ENZYME E1
LLU|FUN_013553-T1ALPHA-1,2 MANNOSYLTRANSFERASE KTR1
LLU|FUN_013554-T1
LLU|FUN_013555-T1PROTEIN GAMETE EXPRESSED 1
LLU|FUN_013556-T1HOST CELL FACTOR
LLU|FUN_013557-T1
LLU|FUN_013558-T139S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED
LLU|FUN_013559-T1RGD1561648
LLU|FUN_013560-T1RGD1561648
LLU|FUN_013561-T1
LLU|FUN_013562-T1
LLU|FUN_013563-T1
LLU|FUN_013564-T1LEUCINE ZIPPER PROTEIN 4-RELATED
LLU|FUN_013565-T1
LLU|FUN_013566-T1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
LLU|FUN_013567-T1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
LLU|FUN_013568-T1
LLU|FUN_013569-T1MONOCARBOXYLATE TRANSPORTER
LLU|FUN_013570-T1
LLU|FUN_013571-T1
LLU|FUN_013572-T1
LLU|FUN_013573-T1
LLU|FUN_013574-T1GUANYLYL CYCLASE
LLU|FUN_013575-T1
LLU|FUN_013576-T1
LLU|FUN_013577-T1NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12
LLU|FUN_013578-T1
LLU|FUN_013579-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
LLU|FUN_013580-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_013581-T1
LLU|FUN_013582-T1
LLU|FUN_013583-T1
LLU|FUN_013584-T1RHO GUANINE EXCHANGE FACTOR-RELATED
LLU|FUN_013585-T1
LLU|FUN_013586-T1
LLU|FUN_013587-T1
LLU|FUN_013588-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_013589-T1
LLU|FUN_013590-T1
LLU|FUN_013591-T1IKB KINASE
LLU|FUN_013592-T1TYROSINE-PROTEIN KINASE
LLU|FUN_013593-T1
LLU|FUN_013594-T1ELONGATION FACTOR G, MITOCHONDRIAL
LLU|FUN_013595-T1ELONGATION FACTOR G, MITOCHONDRIAL
LLU|FUN_013596-T1-
LLU|FUN_013597-T1RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 33
LLU|FUN_013598-T1SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8
LLU|FUN_013599-T1
LLU|FUN_013600-T1
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