Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_013296-T1 | |
LLU|FUN_013297-T1 | HEAT SHOCK PROTEIN 70KDA |
LLU|FUN_013298-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_013299-T1 | |
LLU|FUN_013300-T1 | |
LLU|FUN_013301-T1 | |
LLU|FUN_013302-T1 | |
LLU|FUN_013303-T1 | |
LLU|FUN_013304-T1 | |
LLU|FUN_013305-T1 | NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN |
LLU|FUN_013306-T1 | |
LLU|FUN_013307-T1 | |
LLU|FUN_013308-T1 | |
LLU|FUN_013309-T1 | |
LLU|FUN_013310-T1 | |
LLU|FUN_013311-T1 | |
LLU|FUN_013312-T1 | |
LLU|FUN_013313-T1 | |
LLU|FUN_013314-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_013315-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_013316-T1 | CENTROMERE PROTEIN X |
LLU|FUN_013317-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_013318-T1 | KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2 |
LLU|FUN_013319-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_013320-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_013321-T1 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
LLU|FUN_013322-T1 | PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR |
LLU|FUN_013323-T1 | |
LLU|FUN_013324-T1 | |
LLU|FUN_013325-T1 | UNCHARACTERIZED |
LLU|FUN_013326-T1 | U3 SMALL NUCLEOLAR RNA U3 SNORNA ASSOCIATED PROTEIN |
LLU|FUN_013327-T1 | PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED |
LLU|FUN_013328-T1 | 60S ACIDIC RIBOSOMAL PROTEIN P1 |
LLU|FUN_013329-T1 | |
LLU|FUN_013330-T1 | RECEPTOR-BINDING CANCER ANTIGEN EXPRESSED ON SISO CELLS CANCER ASSOCIATED SURFACE ANTIGEN RCAS1 ESTROGEN RECEPTOR-BINDING FRAGMENT- ASSOCIATED GENE 9 PROTEIN |
LLU|FUN_013331-T1 | PROTEIN LKAAEAR1 |
LLU|FUN_013332-T1 | MYOSIN REGULATORY LIGHT CHAIN 2 |
LLU|FUN_013333-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_013334-T1 | |
LLU|FUN_013335-T1 | T-BOX PROTEIN-RELATED |
LLU|FUN_013336-T1 | |
LLU|FUN_013339-T1 | RAS-RELATED PROTEIN RAB |
LLU|FUN_013340-T1 | |
LLU|FUN_013341-T1 | - |
LLU|FUN_013342-T1 | TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN |
LLU|FUN_013343-T1 | |
LLU|FUN_013344-T1 | RNA BINDING PROTEIN PUMILIO-RELATED |
LLU|FUN_013345-T1 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
LLU|FUN_013346-T1 | |
LLU|FUN_013347-T1 | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN |