Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_013348-T1 | DNA-DIRECTED RNA POLYMERASE |
LLU|FUN_013349-T1 | |
LLU|FUN_013350-T1 | TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE |
LLU|FUN_013351-T1 | |
LLU|FUN_013352-T1 | |
LLU|FUN_013353-T1 | ARSENITE-RESISTANCE PROTEIN 2 |
LLU|FUN_013354-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_013355-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
LLU|FUN_013356-T1 | PKSB |
LLU|FUN_013357-T1 | |
LLU|FUN_013358-T1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |
LLU|FUN_013359-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_013360-T1 | |
LLU|FUN_013361-T1 | |
LLU|FUN_013362-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_013363-T1 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_013364-T1 | |
LLU|FUN_013365-T1 | |
LLU|FUN_013366-T1 | |
LLU|FUN_013367-T1 | |
LLU|FUN_013368-T1 | NETRIN RECEPTOR UNC5 |
LLU|FUN_013369-T1 | NETRIN RECEPTOR UNC5 |
LLU|FUN_013370-T1 | |
LLU|FUN_013371-T1 | |
LLU|FUN_013372-T1 | |
LLU|FUN_013373-T1 | |
LLU|FUN_013374-T1 | ABC TRANSPORTER B FAMILY |
LLU|FUN_013375-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_013376-T1 | |
LLU|FUN_013377-T1 | |
LLU|FUN_013378-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_013379-T1 | |
LLU|FUN_013380-T1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_013381-T1 | |
LLU|FUN_013382-T1 | |
LLU|FUN_013383-T1 | |
LLU|FUN_013384-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_013385-T1 | ALPHA- 1,3 -FUCOSYLTRANSFERASE |
LLU|FUN_013386-T1 | |
LLU|FUN_013387-T1 | |
LLU|FUN_013388-T1 | ADAPTIN, ALPHA/GAMMA/EPSILON |
LLU|FUN_013389-T1 | |
LLU|FUN_013390-T1 | |
LLU|FUN_013391-T1 | TESTIS-EXPRESSED PROTEIN 26 ISOFORM X3 |
LLU|FUN_013392-T1 | CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR |
LLU|FUN_013393-T1 | |
LLU|FUN_013394-T1 | |
LLU|FUN_013395-T1 | ANTIGEN BSP, PUTATIVE-RELATED |
LLU|FUN_013396-T1 | CARBOHYDRATE SULFOTRANSFERASE 15 |
LLU|FUN_013397-T1 | CARBOHYDRATE SULFOTRANSFERASE 15 |