About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_013501-T1
LLU|FUN_013502-T1
LLU|FUN_013503-T1
LLU|FUN_013504-T1
LLU|FUN_013505-T1
LLU|FUN_013506-T1
LLU|FUN_013507-T1
LLU|FUN_013508-T1
LLU|FUN_013509-T1
LLU|FUN_013510-T1TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE
LLU|FUN_013511-T1
LLU|FUN_013512-T1
LLU|FUN_013513-T1I-KAPPA-B-LIKE PROTEIN IKBL
LLU|FUN_013514-T1G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE
LLU|FUN_013515-T1
LLU|FUN_013516-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 40
LLU|FUN_013517-T160S RIBOSOMAL PROTEIN L3-RELATED
LLU|FUN_013518-T1NADH-UBIQUINONE OXIDOREDUCTASE PDSW SUBUNIT
LLU|FUN_013519-T1
LLU|FUN_013520-T1
LLU|FUN_013521-T1PAIRED IMMUNOGLOBULIN-LIKE TYPE 2 RECEPTOR
LLU|FUN_013522-T1
LLU|FUN_013523-T1
LLU|FUN_013524-T1MUCIN 4-RELATED
LLU|FUN_013525-T1
LLU|FUN_013526-T1
LLU|FUN_013527-T1
LLU|FUN_013528-T1EF-HAND CALCIUM-BINDING DOMAIN-CONTAINING PROTEIN 10
LLU|FUN_013529-T1WD40 REPEAT PROTEIN SWD2
LLU|FUN_013530-T1PROTEIN PHOSPHATASE 2C
LLU|FUN_013531-T1ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1
LLU|FUN_013532-T1TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
LLU|FUN_013533-T1
LLU|FUN_013534-T1TRANSCRIPTION FACTOR SMIF DECAPPING ENZYME DCP1
LLU|FUN_013535-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
LLU|FUN_013536-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL TYPE A SUBUNIT ALPHA-1
LLU|FUN_013537-T1
LLU|FUN_013538-T1
LLU|FUN_013539-T1
LLU|FUN_013540-T1TENASCIN
LLU|FUN_013541-T1FTP DOMAIN-CONTAINING PROTEIN
LLU|FUN_013542-T1
LLU|FUN_013543-T1
LLU|FUN_013544-T1
LLU|FUN_013545-T1TENASCIN
LLU|FUN_013546-T1
LLU|FUN_013547-T1
LLU|FUN_013548-T1
LLU|FUN_013549-T1TENASCIN
LLU|FUN_013550-T1TENASCIN
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