Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_013851-T1 | |
LLU|FUN_013852-T1 | |
LLU|FUN_013853-T1 | |
LLU|FUN_013854-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_013855-T1 | |
LLU|FUN_013856-T1 | |
LLU|FUN_013857-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_013858-T1 | |
LLU|FUN_013859-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_013860-T1 | MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED |
LLU|FUN_013861-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
LLU|FUN_013862-T1 | FGF RECEPTOR ACTIVATING PROTEIN 1 |
LLU|FUN_013863-T1 | LUPUS LA PROTEIN-RELATED |
LLU|FUN_013864-T1 | |
LLU|FUN_013865-T1 | ARGINYL-TRNA SYNTHETASE |
LLU|FUN_013866-T1 | |
LLU|FUN_013867-T1 | UNCHARACTERIZED |
LLU|FUN_013868-T1 | |
LLU|FUN_013869-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_013870-T1 | ARGINYL-TRNA SYNTHETASE |
LLU|FUN_013871-T1 | B-LYMPHOCYTE ANTIGEN-RELATED |
LLU|FUN_013872-T1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
LLU|FUN_013873-T1 | |
LLU|FUN_013874-T1 | |
LLU|FUN_013875-T1 | |
LLU|FUN_013876-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_013877-T1 | BIFUNCTIONAL DTTP/UTP PYROPHOSPHATASE/METHYLTRANSFERASE PROTEIN-RELATED |
LLU|FUN_013878-T1 | PROTEIN ABHD18 |
LLU|FUN_013879-T1 | PROTEIN ABHD18 |
LLU|FUN_013880-T1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
LLU|FUN_013881-T1 | |
LLU|FUN_013882-T1 | |
LLU|FUN_013883-T1 | MYOTUBULARIN-RELATED |
LLU|FUN_013884-T1 | |
LLU|FUN_013885-T1 | ANKYRIN REPEAT FAMILY PROTEIN |
LLU|FUN_013886-T1 | |
LLU|FUN_013887-T1 | SORTING NEXIN |
LLU|FUN_013888-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_013889-T1 | |
LLU|FUN_013891-T1 | |
LLU|FUN_013892-T1 | SOLUTE CARRIER FAMILY 35 |
LLU|FUN_013893-T1 | |
LLU|FUN_013894-T1 | LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN |
LLU|FUN_013895-T1 | |
LLU|FUN_013896-T1 | CARBOHYDRATE BINDING DOMAIN CONTAINING PROTEIN |
LLU|FUN_013897-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_013898-T1 | |
LLU|FUN_013899-T1 | |
LLU|FUN_013900-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_013901-T1 |