About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_013902-T1
LLU|FUN_013903-T1COLLAGEN ALPHA
LLU|FUN_013904-T1
LLU|FUN_013905-T1
LLU|FUN_013906-T1
LLU|FUN_013907-T1
LLU|FUN_013908-T1
LLU|FUN_013909-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_013910-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_013911-T1
LLU|FUN_013912-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_013913-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
LLU|FUN_013914-T1
LLU|FUN_013915-T1
LLU|FUN_013916-T1
LLU|FUN_013917-T1
LLU|FUN_013918-T1PROTEIN VAV
LLU|FUN_013919-T1PROTEIN VAV
LLU|FUN_013920-T1RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS
LLU|FUN_013921-T1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
LLU|FUN_013922-T1UNCHARACTERIZED
LLU|FUN_013923-T1
LLU|FUN_013924-T1UNCHARACTERIZED
LLU|FUN_013925-T1UDP-N-ACETYLGLUCOSAMINE--DOLICHYL-PHOSPHATE N-ACETYLGLUCOSAMINEPHOSPHOTRANSFERASE
LLU|FUN_013926-T1HISTONE H2A
LLU|FUN_013927-T160S RIBOSOMAL PROTEIN L28
LLU|FUN_013928-T1
LLU|FUN_013929-T1-
LLU|FUN_013930-T1PROTEIN ODR-4 HOMOLOG
LLU|FUN_013931-T1ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN
LLU|FUN_013932-T1COILED-COIL ALPHA-HELICAL ROD PROTEIN 1
LLU|FUN_013933-T1MYOMEGALIN
LLU|FUN_013934-T1
LLU|FUN_013935-T1
LLU|FUN_013936-T1USP DOMAIN-CONTAINING PROTEIN
LLU|FUN_013937-T1TOLL-LIKE RECEPTOR
LLU|FUN_013938-T1TOLL-LIKE RECEPTOR
LLU|FUN_013939-T1RHOMBOID-RELATED PROTEIN
LLU|FUN_013940-T1
LLU|FUN_013941-T1HAMARTIN
LLU|FUN_013942-T1HAMARTIN
LLU|FUN_013943-T1
LLU|FUN_013944-T1SH3 MULTIPLE DOMAIN
LLU|FUN_013945-T1
LLU|FUN_013946-T1
LLU|FUN_013947-T1
LLU|FUN_013948-T1PROTEIN CBR-CLEC-78
LLU|FUN_013949-T1
LLU|FUN_013950-T1PEPTIDASE
LLU|FUN_013951-T1
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