Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_010669-T1 | |
LLU|FUN_010670-T1 | INTIMAL THICKNESS RECEPTOR-RELATED |
LLU|FUN_010671-T1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 4 HOMOLOG, MITOCHONDRIAL |
LLU|FUN_010672-T1 | |
LLU|FUN_010673-T1 | |
LLU|FUN_010674-T1 | INOSITOL MONOPHOSPHATASE |
LLU|FUN_010675-T1 | ATP-DEPENDENT PROTEASE |
LLU|FUN_010676-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 12 |
LLU|FUN_010677-T1 | IST1 FAMILY MEMBER |
LLU|FUN_010678-T1 | N-MYC DOWNSTREAM REGULATED |
LLU|FUN_010679-T1 | |
LLU|FUN_010680-T1 | MALE FERTILITY FACTOR KL5 |
LLU|FUN_010681-T1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
LLU|FUN_010682-T1 | |
LLU|FUN_010683-T1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
LLU|FUN_010684-T1 | |
LLU|FUN_010685-T1 | |
LLU|FUN_010686-T1 | |
LLU|FUN_010687-T1 | AGAP008005-PA |
LLU|FUN_010688-T1 | AGAP008005-PA |
LLU|FUN_010689-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_010690-T1 | |
LLU|FUN_010691-T1 | |
LLU|FUN_010692-T1 | IRE1-RELATED |
LLU|FUN_010693-T1 | |
LLU|FUN_010694-T1 | |
LLU|FUN_010695-T1 | |
LLU|FUN_010696-T1 | |
LLU|FUN_010697-T1 | |
LLU|FUN_010698-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_010699-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_010700-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_010701-T1 | |
LLU|FUN_010702-T1 | |
LLU|FUN_010703-T1 | |
LLU|FUN_010704-T1 | |
LLU|FUN_010705-T1 | PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B |
LLU|FUN_010706-T1 | |
LLU|FUN_010707-T1 | - |
LLU|FUN_010708-T1 | |
LLU|FUN_010709-T1 | GALACTOSE-3-O-SULFOTRANSFERASE |
LLU|FUN_010710-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_010711-T1 | |
LLU|FUN_010712-T1 | ARRESTIN DOMAIN CONTAINING PROTEIN |
LLU|FUN_010713-T1 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
LLU|FUN_010714-T1 | BUD13 HOMOLOG |
LLU|FUN_010715-T1 | |
LLU|FUN_010716-T1 | DAP3-BINDING CELL DEATH ENHANCER 1 |
LLU|FUN_010717-T1 | CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL |
LLU|FUN_010718-T1 |