Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_010769-T1 | OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC |
LLU|FUN_010770-T1 | - |
LLU|FUN_010771-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
LLU|FUN_010772-T1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
LLU|FUN_010773-T1 | PROTEIN PHOSPHATASE |
LLU|FUN_010774-T1 | E3 UBIQUITIN-PROTEIN LIGASE TRIM37 |
LLU|FUN_010775-T1 | TRPL TRANSLOCATION DEFECT PROTEIN 14 |
LLU|FUN_010776-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_010777-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_010778-T1 | |
LLU|FUN_010779-T1 | |
LLU|FUN_010780-T1 | |
LLU|FUN_010781-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_010782-T1 | |
LLU|FUN_010783-T1 | LEUCINE RICH REPEAT IN FLII INTERACTING PROTEIN |
LLU|FUN_010784-T1 | CYTOCHROME B561-RELATED |
LLU|FUN_010785-T1 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
LLU|FUN_010786-T1 | METHYLMALONYL-COA MUTASE, MITOCHONDRIAL-RELATED |
LLU|FUN_010787-T1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
LLU|FUN_010788-T1 | |
LLU|FUN_010789-T1 | RYANODINE RECEPTOR AND IP3 RECEPTOR |
LLU|FUN_010790-T1 | |
LLU|FUN_010791-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_010792-T1 | BONUS, ISOFORM C-RELATED |
LLU|FUN_010793-T1 | |
LLU|FUN_010794-T1 | |
LLU|FUN_010795-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_010796-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_010797-T1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
LLU|FUN_010798-T1 | |
LLU|FUN_010799-T1 | EG:80H7.2 PROTEIN |
LLU|FUN_010800-T1 | |
LLU|FUN_010801-T1 | TENASCIN |
LLU|FUN_010805-T1 | |
LLU|FUN_010806-T1 | |
LLU|FUN_010807-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
LLU|FUN_010808-T1 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
LLU|FUN_010809-T1 | MITOCHONDRIAL METAL TRANSPORTER 1-RELATED |
LLU|FUN_010810-T1 | MITOCHONDRIAL METAL TRANSPORTER 1-RELATED |
LLU|FUN_010811-T1 | |
LLU|FUN_010812-T1 | ALDO/KETO REDUCTASE |
LLU|FUN_010813-T1 | |
LLU|FUN_010814-T1 | |
LLU|FUN_010815-T1 | |
LLU|FUN_010816-T1 | E3 UBIQUITIN-PROTEIN LIGASE PELLINO-RELATED |
LLU|FUN_010817-T1 | ACTIN |
LLU|FUN_010818-T1 | MEMBRANE-ASSOCIATED PROGESTERONE RECEPTOR COMPONENT-RELATED |
LLU|FUN_010819-T1 | AUTOCRINE PROLIFERATION REPRESSOR PROTEIN A |
LLU|FUN_010820-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_010821-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |