Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_010822-T1 | |
LLU|FUN_010823-T1 | GENE, 32742-RELATED-RELATED |
LLU|FUN_010824-T1 | GENE 9195-RELATED-RELATED |
LLU|FUN_010825-T1 | LON PROTEASE |
LLU|FUN_010826-T1 | |
LLU|FUN_010827-T1 | SYNAPTOTAGMIN |
LLU|FUN_010828-T1 | |
LLU|FUN_010829-T1 | SYNAPTOTAGMIN |
LLU|FUN_010830-T1 | |
LLU|FUN_010831-T1 | UNCHARACTERIZED |
LLU|FUN_010832-T1 | - |
LLU|FUN_010833-T1 | MITOCHONDRIAL DISTRIBUTION REGULATOR MISATO |
LLU|FUN_010834-T1 | LAMIN DM0-RELATED |
LLU|FUN_010835-T1 | |
LLU|FUN_010836-T1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
LLU|FUN_010837-T1 | |
LLU|FUN_010838-T1 | SEMAPHORIN |
LLU|FUN_010839-T1 | R-SEVEN BINDING PROTEIN (R7BP) HOMOLOG |
LLU|FUN_010840-T1 | |
LLU|FUN_010841-T1 | PROTEIN FAM47B |
LLU|FUN_010842-T1 | |
LLU|FUN_010843-T1 | SEMAPHORIN |
LLU|FUN_010844-T1 | |
LLU|FUN_010845-T1 | MONOCARBOXYLATE TRANSPORTER |
LLU|FUN_010846-T1 | ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE |
LLU|FUN_010847-T1 | TAF9 RNA POLYMERASE II, TATA BOX-BINDING PROTEIN (TBP)-ASSOCIATED FACTOR |
LLU|FUN_010848-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_010849-T1 | ARL14 EFFECTOR PROTEIN |
LLU|FUN_010850-T1 | SMALL NUCLEAR RIBONUCLEOPROTEIN F SNRNP-F |
LLU|FUN_010851-T1 | IRON-SULFUR CLUSTER CO-CHAPERONE PROTEIN HSCB |
LLU|FUN_010852-T1 | |
LLU|FUN_010853-T1 | |
LLU|FUN_010854-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
LLU|FUN_010855-T1 | |
LLU|FUN_010856-T1 | ACROSIN-RELATED |
LLU|FUN_010857-T1 | |
LLU|FUN_010858-T1 | TRANSCRIPTION INITIATION FACTOR IIIC TFIIIC , POLYPEPTIDE 3-RELATED |
LLU|FUN_010859-T1 | |
LLU|FUN_010860-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_010861-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_010862-T1 | |
LLU|FUN_010863-T1 | |
LLU|FUN_010864-T1 | |
LLU|FUN_010865-T1 | CADHERIN-87A |
LLU|FUN_010866-T1 | CADHERIN-87A |
LLU|FUN_010867-T1 | ARMC5 ARMADILLO REPEAT-CONTAINING -RELATED |
LLU|FUN_010868-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_010869-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_010870-T1 | |
LLU|FUN_010871-T1 | TITIN |