About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_010619-T1
LLU|FUN_010620-T1N-ACETYLGALACTOSAMINYLTRANSFERASE
LLU|FUN_010621-T1
LLU|FUN_010622-T1
LLU|FUN_010623-T1SCAVENGER RECEPTOR CLASS F
LLU|FUN_010624-T1
LLU|FUN_010625-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_010626-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_010627-T1
LLU|FUN_010628-T1RIKEN CDNA D130052B06 GENE
LLU|FUN_010629-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_010630-T1
LLU|FUN_010631-T1
LLU|FUN_010632-T1
LLU|FUN_010633-T1
LLU|FUN_010634-T1
LLU|FUN_010635-T1
LLU|FUN_010636-T1CADHERIN-23
LLU|FUN_010637-T1ABC TRANSPORTER B FAMILY
LLU|FUN_010638-T1
LLU|FUN_010639-T1ATP-BINDING CASSETTE SUB-FAMILY B
LLU|FUN_010640-T1ATP-BINDING CASSETTE SUB-FAMILY B
LLU|FUN_010641-T1ABC TRANSPORTER B FAMILY
LLU|FUN_010642-T1
LLU|FUN_010643-T1
LLU|FUN_010644-T1E3 UBIQUITIN-PROTEIN LIGASE MIB2
LLU|FUN_010645-T1
LLU|FUN_010646-T1ACROSIN-RELATED
LLU|FUN_010647-T1
LLU|FUN_010648-T1
LLU|FUN_010649-T1ACROSIN-RELATED
LLU|FUN_010650-T1ACROSIN-RELATED
LLU|FUN_010651-T1OVOCHYMASE-RELATED
LLU|FUN_010652-T1TRYPSIN-RELATED
LLU|FUN_010653-T1
LLU|FUN_010654-T1CHYMOTRYPSIN-RELATED
LLU|FUN_010655-T1
LLU|FUN_010656-T1POLYCYSTIN FAMILY MEMBER
LLU|FUN_010657-T1TESTIS-EXPRESSED PROTEIN 36
LLU|FUN_010658-T1
LLU|FUN_010659-T1SARCOMA ANTIGEN NY-SAR-23
LLU|FUN_010660-T1PSEUDOURIDYLATE SYNTHASE
LLU|FUN_010661-T1PROTEIN DPCD
LLU|FUN_010662-T1PROBABLE MEMBRANE PROTEIN DUF221-RELATED
LLU|FUN_010663-T139S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL
LLU|FUN_010664-T1
LLU|FUN_010665-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
LLU|FUN_010666-T1ZINC FINGER PROTEIN
LLU|FUN_010667-T1
LLU|FUN_010668-T1TRANSMEMBRANE PROTEIN 246
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