Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_010466-T1 | |
LLU|FUN_010467-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_010468-T1 | SUGAR KINASE |
LLU|FUN_010469-T1 | TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS |
LLU|FUN_010470-T1 | MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE |
LLU|FUN_010471-T1 | |
LLU|FUN_010472-T1 | - |
LLU|FUN_010473-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_010474-T1 | GLUTATHIONE S-TRANSFERASE |
LLU|FUN_010475-T1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
LLU|FUN_010476-T1 | |
LLU|FUN_010477-T1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
LLU|FUN_010478-T1 | |
LLU|FUN_010479-T1 | |
LLU|FUN_010480-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_010481-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_010482-T1 | |
LLU|FUN_010483-T1 | |
LLU|FUN_010484-T1 | ELECTRON TRANSPORT OXIDOREDUCTASE |
LLU|FUN_010485-T1 | UNCHARACTERIZED |
LLU|FUN_010486-T1 | RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED |
LLU|FUN_010487-T1 | RNA BINDING PROTEIN |
LLU|FUN_010490-T1 | |
LLU|FUN_010491-T1 | MRN COMPLEX-INTERACTING PROTEIN |
LLU|FUN_010492-T1 | DIACYLGLYCEROL KINASE |
LLU|FUN_010493-T1 | SCHLAFEN |
LLU|FUN_010494-T1 | VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED |
LLU|FUN_010495-T1 | ANAPHASE-PROMOTING COMPLEX SUBUNIT 13 |
LLU|FUN_010496-T1 | UNCHARACTERIZED |
LLU|FUN_010497-T1 | |
LLU|FUN_010498-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_010499-T1 | |
LLU|FUN_010500-T1 | |
LLU|FUN_010501-T1 | |
LLU|FUN_010502-T1 | |
LLU|FUN_010503-T1 | |
LLU|FUN_010504-T1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
LLU|FUN_010505-T1 | |
LLU|FUN_010506-T1 | KYNURENINASE |
LLU|FUN_010507-T1 | ACTIVATOR OF BASAL TRANSCRIPTION 1 |
LLU|FUN_010508-T1 | |
LLU|FUN_010509-T1 | ORGANIC ANION TRANSPORTER |
LLU|FUN_010510-T1 | |
LLU|FUN_010511-T1 | ORGANIC ANION TRANSPORTER |
LLU|FUN_010512-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
LLU|FUN_010513-T1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 |
LLU|FUN_010514-T1 | ANDROGEN-INDUCED PROTEIN 1-RELATED |
LLU|FUN_010515-T1 | SCHNURRI, ISOFORM F |
LLU|FUN_010516-T1 | DUMPY: SHORTER THAN WILD-TYPE |
LLU|FUN_010517-T1 |