About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_010466-T1
LLU|FUN_010467-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_010468-T1SUGAR KINASE
LLU|FUN_010469-T1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
LLU|FUN_010470-T1MITOCHONDRIA ASSOCIATED GRANULOCYTE MACROPHAGE CSF SIGNALING MOLECULE
LLU|FUN_010471-T1
LLU|FUN_010472-T1-
LLU|FUN_010473-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
LLU|FUN_010474-T1GLUTATHIONE S-TRANSFERASE
LLU|FUN_010475-T1SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA
LLU|FUN_010476-T1
LLU|FUN_010477-T1PHOSPHOENOLPYRUVATE CARBOXYLASE
LLU|FUN_010478-T1
LLU|FUN_010479-T1
LLU|FUN_010480-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_010481-T1CRUMBS FAMILY MEMBER
LLU|FUN_010482-T1
LLU|FUN_010483-T1
LLU|FUN_010484-T1ELECTRON TRANSPORT OXIDOREDUCTASE
LLU|FUN_010485-T1UNCHARACTERIZED
LLU|FUN_010486-T1RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED
LLU|FUN_010487-T1RNA BINDING PROTEIN
LLU|FUN_010490-T1
LLU|FUN_010491-T1MRN COMPLEX-INTERACTING PROTEIN
LLU|FUN_010492-T1DIACYLGLYCEROL KINASE
LLU|FUN_010493-T1SCHLAFEN
LLU|FUN_010494-T1VESICLE TRANSPORT V-SNARE PROTEIN VTI1-RELATED
LLU|FUN_010495-T1ANAPHASE-PROMOTING COMPLEX SUBUNIT 13
LLU|FUN_010496-T1UNCHARACTERIZED
LLU|FUN_010497-T1
LLU|FUN_010498-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_010499-T1
LLU|FUN_010500-T1
LLU|FUN_010501-T1
LLU|FUN_010502-T1
LLU|FUN_010503-T1
LLU|FUN_010504-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
LLU|FUN_010505-T1
LLU|FUN_010506-T1KYNURENINASE
LLU|FUN_010507-T1ACTIVATOR OF BASAL TRANSCRIPTION 1
LLU|FUN_010508-T1
LLU|FUN_010509-T1ORGANIC ANION TRANSPORTER
LLU|FUN_010510-T1
LLU|FUN_010511-T1ORGANIC ANION TRANSPORTER
LLU|FUN_010512-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
LLU|FUN_010513-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9
LLU|FUN_010514-T1ANDROGEN-INDUCED PROTEIN 1-RELATED
LLU|FUN_010515-T1SCHNURRI, ISOFORM F
LLU|FUN_010516-T1DUMPY: SHORTER THAN WILD-TYPE
LLU|FUN_010517-T1
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