Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_010363-T1 | |
LLU|FUN_010364-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
LLU|FUN_010365-T1 | |
LLU|FUN_010366-T1 | TRANSFERASE, PUTATIVE-RELATED |
LLU|FUN_010367-T1 | |
LLU|FUN_010368-T1 | |
LLU|FUN_010369-T1 | PEPTIDASE |
LLU|FUN_010370-T1 | ATP-DEPENDENT DNA HELICASE |
LLU|FUN_010371-T1 | |
LLU|FUN_010372-T1 | |
LLU|FUN_010373-T1 | BRIX DOMAIN CONTAINING PROTEIN |
LLU|FUN_010374-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 81 |
LLU|FUN_010375-T1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO |
LLU|FUN_010376-T1 | ANKYRIN REPEAT PROTEIN |
LLU|FUN_010377-T1 | |
LLU|FUN_010378-T1 | |
LLU|FUN_010379-T1 | PROTEIN CBG12054-RELATED |
LLU|FUN_010380-T1 | |
LLU|FUN_010381-T1 | |
LLU|FUN_010382-T1 | S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN |
LLU|FUN_010383-T1 | |
LLU|FUN_010384-T1 | |
LLU|FUN_010385-T1 | |
LLU|FUN_010386-T1 | |
LLU|FUN_010387-T1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
LLU|FUN_010388-T1 | IMPORTIN ALPHA |
LLU|FUN_010389-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 58 |
LLU|FUN_010390-T1 | GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN |
LLU|FUN_010391-T1 | |
LLU|FUN_010392-T1 | GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN |
LLU|FUN_010393-T1 | |
LLU|FUN_010394-T1 | |
LLU|FUN_010395-T1 | |
LLU|FUN_010396-T1 | |
LLU|FUN_010397-T1 | |
LLU|FUN_010398-T1 | ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS |
LLU|FUN_010399-T1 | |
LLU|FUN_010400-T1 | |
LLU|FUN_010401-T1 | ATP-DEPENDENT CLP PROTEASE |
LLU|FUN_010402-T1 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
LLU|FUN_010403-T1 | GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED |
LLU|FUN_010404-T1 | |
LLU|FUN_010405-T1 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
LLU|FUN_010406-T1 | |
LLU|FUN_010409-T1 | SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN |
LLU|FUN_010410-T1 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
LLU|FUN_010411-T1 | |
LLU|FUN_010412-T1 | IL16-RELATED |
LLU|FUN_010413-T1 | LIM DOMAIN ONLY PROTEIN 7 |
LLU|FUN_010414-T1 | LIM DOMAIN ONLY PROTEIN 7 |