About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_010363-T1
LLU|FUN_010364-T1RAN GTPASE-ACTIVATING PROTEIN 1
LLU|FUN_010365-T1
LLU|FUN_010366-T1TRANSFERASE, PUTATIVE-RELATED
LLU|FUN_010367-T1
LLU|FUN_010368-T1
LLU|FUN_010369-T1PEPTIDASE
LLU|FUN_010370-T1ATP-DEPENDENT DNA HELICASE
LLU|FUN_010371-T1
LLU|FUN_010372-T1
LLU|FUN_010373-T1BRIX DOMAIN CONTAINING PROTEIN
LLU|FUN_010374-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 81
LLU|FUN_010375-T1PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO
LLU|FUN_010376-T1ANKYRIN REPEAT PROTEIN
LLU|FUN_010377-T1
LLU|FUN_010378-T1
LLU|FUN_010379-T1PROTEIN CBG12054-RELATED
LLU|FUN_010380-T1
LLU|FUN_010381-T1
LLU|FUN_010382-T1S-ADENOSYL-L-METHIONINE:CARBOXYL METHYLTRANSFERASE FAMILY PROTEIN
LLU|FUN_010383-T1
LLU|FUN_010384-T1
LLU|FUN_010385-T1
LLU|FUN_010386-T1
LLU|FUN_010387-T1MAP KINASE KINASE KINASE SSK2-RELATED-RELATED
LLU|FUN_010388-T1IMPORTIN ALPHA
LLU|FUN_010389-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 58
LLU|FUN_010390-T1GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN
LLU|FUN_010391-T1
LLU|FUN_010392-T1GROWTH AND TRANSFORMATION-DEPENDENT PROTEIN
LLU|FUN_010393-T1
LLU|FUN_010394-T1
LLU|FUN_010395-T1
LLU|FUN_010396-T1
LLU|FUN_010397-T1
LLU|FUN_010398-T1ZINC FINGER PROTEIN WITH KRAB AND SCAN DOMAINS
LLU|FUN_010399-T1
LLU|FUN_010400-T1
LLU|FUN_010401-T1ATP-DEPENDENT CLP PROTEASE
LLU|FUN_010402-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
LLU|FUN_010403-T1GLUTAMYL-TRNA GLN AMIDOTRANSFERASE SUBUNIT B MITOCHONDRIAL AND PROKARYOTIC PET112-RELATED
LLU|FUN_010404-T1
LLU|FUN_010405-T1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
LLU|FUN_010406-T1
LLU|FUN_010409-T1SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN
LLU|FUN_010410-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
LLU|FUN_010411-T1
LLU|FUN_010412-T1IL16-RELATED
LLU|FUN_010413-T1LIM DOMAIN ONLY PROTEIN 7
LLU|FUN_010414-T1LIM DOMAIN ONLY PROTEIN 7
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