About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_010111-T1
LLU|FUN_010112-T1
LLU|FUN_010113-T1MITOCHONDRIAL 2-OXODICARBOXYLATE CARRIER 1-RELATED
LLU|FUN_010114-T1XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER
LLU|FUN_010115-T1
LLU|FUN_010116-T1
LLU|FUN_010117-T1
LLU|FUN_010118-T1
LLU|FUN_010119-T1
LLU|FUN_010120-T1
LLU|FUN_010121-T1BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED
LLU|FUN_010122-T1NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE
LLU|FUN_010123-T1UNCHARACTERIZED
LLU|FUN_010124-T1MAKORIN-RELATED
LLU|FUN_010125-T1TRANSMEMBRANE PROTEIN 121B
LLU|FUN_010126-T1DNA REPAIR PROTEIN XP-C / RAD4
LLU|FUN_010127-T1
LLU|FUN_010128-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
LLU|FUN_010129-T1
LLU|FUN_010130-T1KDEL LYS-ASP-GLU-LEU CONTAINING - RELATED
LLU|FUN_010131-T1WASH COMPLEX SUBUNIT 4
LLU|FUN_010132-T1WASH COMPLEX SUBUNIT 4
LLU|FUN_010133-T1FMRFAMIDE RECEPTOR-RELATED
LLU|FUN_010134-T1
LLU|FUN_010135-T1CYCLINS
LLU|FUN_010136-T1
LLU|FUN_010137-T1
LLU|FUN_010138-T1-
LLU|FUN_010139-T1
LLU|FUN_010140-T1AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
LLU|FUN_010141-T1AG-1 BLOOD STAGE MEMBRANE PROTEIN HOMOLOGUE
LLU|FUN_010142-T1
LLU|FUN_010143-T1
LLU|FUN_010144-T1
LLU|FUN_010145-T1UPF0565 PROTEIN C2ORF69
LLU|FUN_010146-T1MY011 PROTEIN
LLU|FUN_010147-T1INTEGRIN ALPHA
LLU|FUN_010148-T1ORMDL PROTEINS
LLU|FUN_010149-T1DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL
LLU|FUN_010151-T1
LLU|FUN_010152-T1GUANYLYL CYCLASE
LLU|FUN_010153-T1
LLU|FUN_010154-T1
LLU|FUN_010155-T1SERINE/THREONINE-PROTEIN KINASE NEK
LLU|FUN_010156-T1
LLU|FUN_010157-T1SERINE/THREONINE-PROTEIN KINASE NEK
LLU|FUN_010158-T1
LLU|FUN_010159-T1
LLU|FUN_010160-T1
LLU|FUN_010161-T1
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