About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_009893-T1CYTOCHROME P450 508A4-RELATED
LLU|FUN_009895-T1CYTOCHROME P450 508A4-RELATED
LLU|FUN_009896-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
LLU|FUN_009897-T1LD02310P
LLU|FUN_009898-T1PREFOLDIN SUBUNIT 1-RELATED
LLU|FUN_009899-T1ACONITATE HYDRATASE B
LLU|FUN_009900-T1MODULATOR OF SMOOTHENED PROTEIN
LLU|FUN_009901-T1CLUSTERIN ASSOCIATED PROTEIN 1
LLU|FUN_009902-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
LLU|FUN_009903-T1FIBRILLIN-RELATED
LLU|FUN_009904-T1
LLU|FUN_009905-T1
LLU|FUN_009906-T1
LLU|FUN_009907-T1TYROSINE-PROTEIN KINASE HOPSCOTCH
LLU|FUN_009908-T1
LLU|FUN_009909-T1PARAOXONASE
LLU|FUN_009910-T1
LLU|FUN_009911-T1
LLU|FUN_009912-T1
LLU|FUN_009913-T1PEPTIDASE
LLU|FUN_009914-T1
LLU|FUN_009915-T1TRANSLATION INITIATION FACTOR EIF3-RELATED
LLU|FUN_009916-T1TRANSLATION INITIATION FACTOR EIF3-RELATED
LLU|FUN_009917-T1
LLU|FUN_009918-T1
LLU|FUN_009919-T1
LLU|FUN_009920-T1
LLU|FUN_009921-T1
LLU|FUN_009922-T1
LLU|FUN_009923-T1
LLU|FUN_009924-T1
LLU|FUN_009925-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
LLU|FUN_009926-T1IONOTROPIC GLUTAMATE RECEPTOR
LLU|FUN_009927-T1
LLU|FUN_009928-T1IONOTROPIC GLUTAMATE RECEPTOR
LLU|FUN_009929-T1ATP-BINDING CASSETTE SUB-FAMILY C
LLU|FUN_009930-T126S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 12/COP9 SIGNALOSOME COMPLEX SUBUNIT 4
LLU|FUN_009931-T1TESMIN/TSO1-RELATED
LLU|FUN_009932-T1CHONDROITIN SYNTHASE
LLU|FUN_009933-T1ARRESTIN DOMAIN-CONTAINING PROTEIN D
LLU|FUN_009934-T1
LLU|FUN_009935-T1
LLU|FUN_009936-T1BACTERIOHEMERYTHRIN
LLU|FUN_009937-T1
LLU|FUN_009938-T1
LLU|FUN_009939-T1BACTERIOHEMERYTHRIN
LLU|FUN_009940-T1BACTERIOHEMERYTHRIN
LLU|FUN_009941-T1BACTERIOHEMERYTHRIN
LLU|FUN_009942-T1BACTERIOHEMERYTHRIN
LLU|FUN_009943-T1BACTERIOHEMERYTHRIN
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