Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_009588-T1 | UNCHARACTERIZED |
LLU|FUN_009589-T1 | |
LLU|FUN_009590-T1 | BETA TRANSDUCIN-RELATED PROTEIN |
LLU|FUN_009591-T1 | CARRIER DOMAIN-CONTAINING PROTEIN |
LLU|FUN_009592-T1 | |
LLU|FUN_009593-T1 | SYNTAXIN |
LLU|FUN_009594-T1 | CRSP70 |
LLU|FUN_009595-T1 | TAL1 SCL INTERRUPTING LOCUS |
LLU|FUN_009596-T1 | NUCLEOTIDE KINASE |
LLU|FUN_009597-T1 | E3 UBIQUITIN-PROTEIN LIGASE UHRF-RELATED |
LLU|FUN_009598-T1 | 24-DEHYDROCHOLESTEROL REDUCTASE |
LLU|FUN_009599-T1 | TRANSMEMBRANE PROTEIN CCDC163 |
LLU|FUN_009600-T1 | |
LLU|FUN_009601-T1 | |
LLU|FUN_009602-T1 | |
LLU|FUN_009603-T1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
LLU|FUN_009604-T1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
LLU|FUN_009605-T1 | PROTEIN SHORTAGE IN CHIASMATA 1 ORTHOLOG |
LLU|FUN_009606-T1 | ATP-DEPENDENT CLP PROTEASE PROTEOLYTIC SUBUNIT |
LLU|FUN_009607-T1 | |
LLU|FUN_009608-T1 | |
LLU|FUN_009609-T1 | |
LLU|FUN_009610-T1 | |
LLU|FUN_009611-T1 | |
LLU|FUN_009612-T1 | |
LLU|FUN_009613-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_009614-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_009615-T1 | |
LLU|FUN_009616-T1 | |
LLU|FUN_009617-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_009618-T1 | |
LLU|FUN_009619-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_009620-T1 | |
LLU|FUN_009621-T1 | |
LLU|FUN_009622-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_009623-T1 | |
LLU|FUN_009624-T1 | |
LLU|FUN_009625-T1 | |
LLU|FUN_009627-T1 | |
LLU|FUN_009628-T1 | |
LLU|FUN_009629-T1 | |
LLU|FUN_009630-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
LLU|FUN_009631-T1 | |
LLU|FUN_009632-T1 | |
LLU|FUN_009633-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 |
LLU|FUN_009634-T1 | |
LLU|FUN_009635-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 54 |
LLU|FUN_009636-T1 | |
LLU|FUN_009637-T1 | |
LLU|FUN_009638-T1 |