Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_009285-T1 | NADPH OXIDASE |
LLU|FUN_009286-T1 | CYTOKINE RECEPTOR |
LLU|FUN_009287-T1 | CYTOKINE RECEPTOR |
LLU|FUN_009288-T1 | |
LLU|FUN_009289-T1 | TRANSMEMBRANE PROTEIN 69 |
LLU|FUN_009290-T1 | |
LLU|FUN_009291-T1 | VASCULIN |
LLU|FUN_009292-T1 | |
LLU|FUN_009293-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED |
LLU|FUN_009294-T1 | CYTOKINE RECEPTOR |
LLU|FUN_009295-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_009296-T1 | |
LLU|FUN_009297-T1 | |
LLU|FUN_009298-T1 | ANKYRIN REPEAT PROTEIN |
LLU|FUN_009299-T1 | |
LLU|FUN_009300-T1 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
LLU|FUN_009301-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_009302-T1 | |
LLU|FUN_009303-T1 | ANKYRIN REPEAT CONTAINING |
LLU|FUN_009304-T1 | |
LLU|FUN_009305-T1 | |
LLU|FUN_009306-T1 | |
LLU|FUN_009307-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_009308-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_009309-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_009310-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_009311-T1 | TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED |
LLU|FUN_009312-T1 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_009313-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_009314-T1 | |
LLU|FUN_009315-T1 | ZINC FINGER PROTEIN |
LLU|FUN_009316-T1 | ODD-SKIPPED - RELATED |
LLU|FUN_009317-T1 | PERIAXIN-LIKE |
LLU|FUN_009318-T1 | |
LLU|FUN_009319-T1 | NOTCH LIGAND FAMILY MEMBER |
LLU|FUN_009320-T1 | |
LLU|FUN_009321-T1 | |
LLU|FUN_009322-T1 | |
LLU|FUN_009323-T1 | |
LLU|FUN_009324-T1 | |
LLU|FUN_009325-T1 | ALPHA CATENIN |
LLU|FUN_009326-T1 | |
LLU|FUN_009327-T1 | FUKUTIN RELATED PROTEIN |
LLU|FUN_009328-T1 | HISTIDINE-RICH GLYCOPROTEIN |
LLU|FUN_009329-T1 | MEIOSIS-EXPRESSED GENE 1 PROTEIN |
LLU|FUN_009330-T1 | |
LLU|FUN_009331-T1 | OS09G0542200 PROTEIN |
LLU|FUN_009332-T1 | |
LLU|FUN_009333-T1 | GTP-BINDING PROTEIN ALPHA SUBUNIT |
LLU|FUN_009334-T1 |