Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_008983-T1 | |
LLU|FUN_008984-T1 | |
LLU|FUN_008985-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_008986-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_008987-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_008988-T1 | |
LLU|FUN_008989-T1 | |
LLU|FUN_008990-T1 | |
LLU|FUN_008991-T1 | |
LLU|FUN_008992-T1 | |
LLU|FUN_008993-T1 | LEUCOKININ RECEPTOR-RELATED |
LLU|FUN_008994-T1 | IRE1-RELATED |
LLU|FUN_008995-T1 | |
LLU|FUN_008996-T1 | |
LLU|FUN_008997-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
LLU|FUN_008998-T1 | HISTONE-LYSINE N-METHYLTRANSFERASE SMYD |
LLU|FUN_008999-T1 | |
LLU|FUN_009000-T1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
LLU|FUN_009001-T1 | ARMADILLO-TYPE FOLD-RELATED |
LLU|FUN_009002-T1 | ARMADILLO-TYPE FOLD-RELATED |
LLU|FUN_009003-T1 | ARMADILLO-TYPE FOLD-RELATED |
LLU|FUN_009004-T1 | BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER |
LLU|FUN_009005-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
LLU|FUN_009006-T1 | PROTEIN NAKED CUTICLE |
LLU|FUN_009007-T1 | |
LLU|FUN_009008-T1 | |
LLU|FUN_009009-T1 | |
LLU|FUN_009010-T1 | EXOCYST COMPLEX COMPONENT SEC5 |
LLU|FUN_009011-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_009012-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_009013-T1 | 60 KDA RIBONUCLEOPROTEIN SSA/RO |
LLU|FUN_009014-T1 | FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA |
LLU|FUN_009015-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
LLU|FUN_009016-T1 | ZINC FINGER PROTEIN |
LLU|FUN_009017-T1 | |
LLU|FUN_009018-T1 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
LLU|FUN_009019-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_009020-T1 | GLUCOKINASE REGULATORY PROTEIN |
LLU|FUN_009021-T1 | |
LLU|FUN_009022-T1 | |
LLU|FUN_009023-T1 | TYROSINE-PROTEIN KINASE |
LLU|FUN_009024-T1 | THO COMPLEX SUBUNIT 1 |
LLU|FUN_009025-T1 | SOLUTE CARRIER FAMILY 35 MEMBER B |
LLU|FUN_009026-T1 | |
LLU|FUN_009027-T1 | |
LLU|FUN_009028-T1 | |
LLU|FUN_009029-T1 | |
LLU|FUN_009030-T1 | |
LLU|FUN_009031-T1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
LLU|FUN_009032-T1 | CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN |