About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_008983-T1
LLU|FUN_008984-T1
LLU|FUN_008985-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_008986-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_008987-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
LLU|FUN_008988-T1
LLU|FUN_008989-T1
LLU|FUN_008990-T1
LLU|FUN_008991-T1
LLU|FUN_008992-T1
LLU|FUN_008993-T1LEUCOKININ RECEPTOR-RELATED
LLU|FUN_008994-T1IRE1-RELATED
LLU|FUN_008995-T1
LLU|FUN_008996-T1
LLU|FUN_008997-T1HISTONE-LYSINE N-METHYLTRANSFERASE SMYD
LLU|FUN_008998-T1HISTONE-LYSINE N-METHYLTRANSFERASE SMYD
LLU|FUN_008999-T1
LLU|FUN_009000-T1BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
LLU|FUN_009001-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_009002-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_009003-T1ARMADILLO-TYPE FOLD-RELATED
LLU|FUN_009004-T1BTB/POZ DOMAIN-CONTAINING ADAPTER FOR CUL3-MEDIATED RHOA DEGRADATION PROTEIN FAMILY MEMBER
LLU|FUN_009005-T1PEPTIDYL-PROLYL CIS-TRANS ISOMERASE
LLU|FUN_009006-T1PROTEIN NAKED CUTICLE
LLU|FUN_009007-T1
LLU|FUN_009008-T1
LLU|FUN_009009-T1
LLU|FUN_009010-T1EXOCYST COMPLEX COMPONENT SEC5
LLU|FUN_009011-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_009012-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_009013-T160 KDA RIBONUCLEOPROTEIN SSA/RO
LLU|FUN_009014-T1FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA
LLU|FUN_009015-T1TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER
LLU|FUN_009016-T1ZINC FINGER PROTEIN
LLU|FUN_009017-T1
LLU|FUN_009018-T1ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
LLU|FUN_009019-T1TYROSINE-PROTEIN KINASE
LLU|FUN_009020-T1GLUCOKINASE REGULATORY PROTEIN
LLU|FUN_009021-T1
LLU|FUN_009022-T1
LLU|FUN_009023-T1TYROSINE-PROTEIN KINASE
LLU|FUN_009024-T1THO COMPLEX SUBUNIT 1
LLU|FUN_009025-T1SOLUTE CARRIER FAMILY 35 MEMBER B
LLU|FUN_009026-T1
LLU|FUN_009027-T1
LLU|FUN_009028-T1
LLU|FUN_009029-T1
LLU|FUN_009030-T1
LLU|FUN_009031-T1SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER
LLU|FUN_009032-T1CENTROSOME SPINDLE POLE ASSOCIATED PROTEIN
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