Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_008833-T1 | |
LLU|FUN_008834-T1 | UNCHARACTERIZED |
LLU|FUN_008835-T1 | PIEZO-TYPE MECHANOSENSITIVE ION CHANNEL HOMOLOG |
LLU|FUN_008836-T1 | |
LLU|FUN_008837-T1 | MULTICOPPER OXIDASE-RELATED |
LLU|FUN_008838-T1 | EPHRIN TYPE-B RECEPTOR |
LLU|FUN_008839-T1 | EPHRIN TYPE-B RECEPTOR |
LLU|FUN_008840-T1 | |
LLU|FUN_008841-T1 | CADHERIN-23 |
LLU|FUN_008842-T1 | ATP-DEPENDENT (S)-NAD(P)H-HYDRATE DEHYDRATASE FAMILY MEMBER |
LLU|FUN_008843-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 138 |
LLU|FUN_008844-T1 | |
LLU|FUN_008845-T1 | |
LLU|FUN_008846-T1 | |
LLU|FUN_008847-T1 | |
LLU|FUN_008848-T1 | HISTONE H1 |
LLU|FUN_008849-T1 | HISTONE H1 |
LLU|FUN_008850-T1 | |
LLU|FUN_008851-T1 | |
LLU|FUN_008852-T1 | |
LLU|FUN_008853-T1 | PEPTIDYL-TRNA HYDROLASE |
LLU|FUN_008854-T1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
LLU|FUN_008855-T1 | UNCHARACTERIZED |
LLU|FUN_008856-T1 | ANKYRIN REPEAT-CONTAINING |
LLU|FUN_008857-T1 | |
LLU|FUN_008858-T1 | DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 |
LLU|FUN_008859-T1 | |
LLU|FUN_008860-T1 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
LLU|FUN_008861-T1 | |
LLU|FUN_008862-T1 | |
LLU|FUN_008863-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_008864-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_008865-T1 | |
LLU|FUN_008866-T1 | |
LLU|FUN_008867-T1 | ZINC FINGER PROTEIN |
LLU|FUN_008868-T1 | |
LLU|FUN_008869-T1 | |
LLU|FUN_008870-T1 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_008871-T1 | |
LLU|FUN_008872-T1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
LLU|FUN_008873-T1 | C-1-TETRAHYDROFOLATE SYNTHASE, CYTOPLASMIC-RELATED |
LLU|FUN_008874-T1 | CARNITINE O-ACYLTRANSFERASE |
LLU|FUN_008875-T1 | METHIONINE AMINOPEPTIDASE |
LLU|FUN_008876-T1 | SERINE HYDROLASE RBBP9 |
LLU|FUN_008877-T1 | RETINOL DEHYDROGENASE |
LLU|FUN_008878-T1 | SEC61 GAMMA SUBUNIT |
LLU|FUN_008879-T1 | |
LLU|FUN_008880-T1 | |
LLU|FUN_008881-T1 | |
LLU|FUN_008882-T1 | MULTICOPPER OXIDASE-RELATED |