About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_008679-T1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
LLU|FUN_008680-T1
LLU|FUN_008681-T1
LLU|FUN_008682-T1
LLU|FUN_008683-T1
LLU|FUN_008684-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
LLU|FUN_008685-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_008686-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_008687-T1POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1
LLU|FUN_008688-T1GLYCOSYLTRANSFERASE
LLU|FUN_008689-T1
LLU|FUN_008690-T1
LLU|FUN_008692-T1
LLU|FUN_008693-T1METALLOPHOSPHOESTERASE
LLU|FUN_008694-T1
LLU|FUN_008695-T1PORCUPINE
LLU|FUN_008696-T1
LLU|FUN_008697-T160S RIBOSOMAL PROTEIN L7
LLU|FUN_008698-T1
LLU|FUN_008699-T1
LLU|FUN_008700-T1
LLU|FUN_008701-T1EG:80H7.2 PROTEIN
LLU|FUN_008702-T1DELTEX-RELATED
LLU|FUN_008703-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_008704-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_008705-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_008706-T1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
LLU|FUN_008707-T1G-PROTEIN COUPLED RECEPTOR
LLU|FUN_008708-T1
LLU|FUN_008709-T1
LLU|FUN_008711-T1UNCHARACTERIZED
LLU|FUN_008712-T1UNCHARACTERIZED
LLU|FUN_008713-T1
LLU|FUN_008714-T1SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN
LLU|FUN_008715-T1PALMITOYLTRANSFERASE ZDHHC16
LLU|FUN_008716-T1
LLU|FUN_008717-T1
LLU|FUN_008718-T1
LLU|FUN_008719-T1KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED
LLU|FUN_008720-T1TRANSCRIPTION INITIATION FACTOR TFIID
LLU|FUN_008721-T1
LLU|FUN_008722-T1MYOSIN REGULATORY LIGHT CHAIN 2
LLU|FUN_008723-T1-
LLU|FUN_008724-T1-
LLU|FUN_008725-T1NUCLEAR PORE COMPLEX PROTEIN NUP155
LLU|FUN_008726-T1
LLU|FUN_008727-T1
LLU|FUN_008728-T1PROTHORACICOTROPIC HORMONE, ISOFORM F
LLU|FUN_008729-T1METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED
LLU|FUN_008730-T1CHLORIDE CHANNEL CLIC-LIKE PROTEIN 1
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