Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_008679-T1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
LLU|FUN_008680-T1 | |
LLU|FUN_008681-T1 | |
LLU|FUN_008682-T1 | |
LLU|FUN_008683-T1 | |
LLU|FUN_008684-T1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
LLU|FUN_008685-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_008686-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_008687-T1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
LLU|FUN_008688-T1 | GLYCOSYLTRANSFERASE |
LLU|FUN_008689-T1 | |
LLU|FUN_008690-T1 | |
LLU|FUN_008692-T1 | |
LLU|FUN_008693-T1 | METALLOPHOSPHOESTERASE |
LLU|FUN_008694-T1 | |
LLU|FUN_008695-T1 | PORCUPINE |
LLU|FUN_008696-T1 | |
LLU|FUN_008697-T1 | 60S RIBOSOMAL PROTEIN L7 |
LLU|FUN_008698-T1 | |
LLU|FUN_008699-T1 | |
LLU|FUN_008700-T1 | |
LLU|FUN_008701-T1 | EG:80H7.2 PROTEIN |
LLU|FUN_008702-T1 | DELTEX-RELATED |
LLU|FUN_008703-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_008704-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_008705-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_008706-T1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
LLU|FUN_008707-T1 | G-PROTEIN COUPLED RECEPTOR |
LLU|FUN_008708-T1 | |
LLU|FUN_008709-T1 | |
LLU|FUN_008711-T1 | UNCHARACTERIZED |
LLU|FUN_008712-T1 | UNCHARACTERIZED |
LLU|FUN_008713-T1 | |
LLU|FUN_008714-T1 | SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN |
LLU|FUN_008715-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
LLU|FUN_008716-T1 | |
LLU|FUN_008717-T1 | |
LLU|FUN_008718-T1 | |
LLU|FUN_008719-T1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
LLU|FUN_008720-T1 | TRANSCRIPTION INITIATION FACTOR TFIID |
LLU|FUN_008721-T1 | |
LLU|FUN_008722-T1 | MYOSIN REGULATORY LIGHT CHAIN 2 |
LLU|FUN_008723-T1 | - |
LLU|FUN_008724-T1 | - |
LLU|FUN_008725-T1 | NUCLEAR PORE COMPLEX PROTEIN NUP155 |
LLU|FUN_008726-T1 | |
LLU|FUN_008727-T1 | |
LLU|FUN_008728-T1 | PROTHORACICOTROPIC HORMONE, ISOFORM F |
LLU|FUN_008729-T1 | METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED |
LLU|FUN_008730-T1 | CHLORIDE CHANNEL CLIC-LIKE PROTEIN 1 |