Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_009033-T1 | PROLACTIN REGULATORY ELEMENT BINDING PROTEIN |
LLU|FUN_009034-T1 | PROLACTIN REGULATORY ELEMENT BINDING PROTEIN |
LLU|FUN_009035-T1 | LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED |
LLU|FUN_009036-T1 | SPLICING FACTOR YJU2 |
LLU|FUN_009037-T1 | ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED |
LLU|FUN_009038-T1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
LLU|FUN_009039-T1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
LLU|FUN_009040-T1 | |
LLU|FUN_009041-T1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
LLU|FUN_009042-T1 | SURFEIT LOCUS PROTEIN 6 |
LLU|FUN_009043-T1 | DC12-RELATED |
LLU|FUN_009044-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_009045-T1 | |
LLU|FUN_009046-T1 | |
LLU|FUN_009047-T1 | |
LLU|FUN_009048-T1 | |
LLU|FUN_009049-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
LLU|FUN_009050-T1 | ALKALINE CERAMIDASE 3 |
LLU|FUN_009051-T1 | |
LLU|FUN_009052-T1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
LLU|FUN_009053-T1 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
LLU|FUN_009054-T1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
LLU|FUN_009055-T1 | ZINC FINGER PROTEIN |
LLU|FUN_009056-T1 | |
LLU|FUN_009057-T1 | |
LLU|FUN_009058-T1 | WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED |
LLU|FUN_009059-T1 | |
LLU|FUN_009060-T1 | LONG-CHAIN FATTY ACID TRANSPORT PROTEIN |
LLU|FUN_009061-T1 | PNAS-3 RELATED |
LLU|FUN_009062-T1 | |
LLU|FUN_009063-T1 | TRANSMEMBRANE PROTEIN 141 |
LLU|FUN_009064-T1 | |
LLU|FUN_009065-T1 | |
LLU|FUN_009066-T1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
LLU|FUN_009067-T1 | TRANSCRIPTION INITIATION FACTOR TFIID |
LLU|FUN_009068-T1 | TRANSCRIPTIONAL ADAPTER 1 |
LLU|FUN_009069-T1 | |
LLU|FUN_009070-T1 | FI18240P1-RELATED |
LLU|FUN_009071-T1 | OVOCHYMASE-RELATED |
LLU|FUN_009072-T1 | |
LLU|FUN_009073-T1 | FI04487P |
LLU|FUN_009074-T1 | FI04487P |
LLU|FUN_009075-T1 | PRE-MRNA SPLICING FACTOR |
LLU|FUN_009076-T1 | LD33695P |
LLU|FUN_009077-T1 | HMG-BOX TRANSCRIPTION FACTOR BBX |
LLU|FUN_009078-T1 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3 |
LLU|FUN_009079-T1 | |
LLU|FUN_009080-T1 | |
LLU|FUN_009081-T1 | |
LLU|FUN_009082-T1 |