About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_009033-T1PROLACTIN REGULATORY ELEMENT BINDING PROTEIN
LLU|FUN_009034-T1PROLACTIN REGULATORY ELEMENT BINDING PROTEIN
LLU|FUN_009035-T1LEUCINE-RICH REPEAT AND IQ DOMAIN-CONTAINING PROTEIN 1-RELATED
LLU|FUN_009036-T1SPLICING FACTOR YJU2
LLU|FUN_009037-T1ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED
LLU|FUN_009038-T1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
LLU|FUN_009039-T1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
LLU|FUN_009040-T1
LLU|FUN_009041-T1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
LLU|FUN_009042-T1SURFEIT LOCUS PROTEIN 6
LLU|FUN_009043-T1DC12-RELATED
LLU|FUN_009044-T1ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
LLU|FUN_009045-T1
LLU|FUN_009046-T1
LLU|FUN_009047-T1
LLU|FUN_009048-T1
LLU|FUN_009049-T1SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
LLU|FUN_009050-T1ALKALINE CERAMIDASE 3
LLU|FUN_009051-T1
LLU|FUN_009052-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
LLU|FUN_009053-T1OLIGORIBONUCLEASE, MITOCHONDRIAL
LLU|FUN_009054-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
LLU|FUN_009055-T1ZINC FINGER PROTEIN
LLU|FUN_009056-T1
LLU|FUN_009057-T1
LLU|FUN_009058-T1WITH PUTATIVE URIDYL PYROPHOSPHORYLASE-RELATED
LLU|FUN_009059-T1
LLU|FUN_009060-T1LONG-CHAIN FATTY ACID TRANSPORT PROTEIN
LLU|FUN_009061-T1PNAS-3 RELATED
LLU|FUN_009062-T1
LLU|FUN_009063-T1TRANSMEMBRANE PROTEIN 141
LLU|FUN_009064-T1
LLU|FUN_009065-T1
LLU|FUN_009066-T1FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
LLU|FUN_009067-T1TRANSCRIPTION INITIATION FACTOR TFIID
LLU|FUN_009068-T1TRANSCRIPTIONAL ADAPTER 1
LLU|FUN_009069-T1
LLU|FUN_009070-T1FI18240P1-RELATED
LLU|FUN_009071-T1OVOCHYMASE-RELATED
LLU|FUN_009072-T1
LLU|FUN_009073-T1FI04487P
LLU|FUN_009074-T1FI04487P
LLU|FUN_009075-T1PRE-MRNA SPLICING FACTOR
LLU|FUN_009076-T1LD33695P
LLU|FUN_009077-T1HMG-BOX TRANSCRIPTION FACTOR BBX
LLU|FUN_009078-T1DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC3
LLU|FUN_009079-T1
LLU|FUN_009080-T1
LLU|FUN_009081-T1
LLU|FUN_009082-T1
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