Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_009789-T1 | |
LLU|FUN_009790-T1 | |
LLU|FUN_009791-T1 | TRYPTASE-RELATED |
LLU|FUN_009792-T1 | |
LLU|FUN_009793-T1 | |
LLU|FUN_009794-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
LLU|FUN_009795-T1 | PEPTIDASE |
LLU|FUN_009796-T1 | |
LLU|FUN_009797-T1 | |
LLU|FUN_009798-T1 | |
LLU|FUN_009799-T1 | BTB POZ DOMAIN CONTAINING 7 |
LLU|FUN_009800-T1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIII |
LLU|FUN_009801-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
LLU|FUN_009802-T1 | S -2-HYDROXY-ACID OXIDASE-RELATED |
LLU|FUN_009803-T1 | |
LLU|FUN_009804-T1 | |
LLU|FUN_009805-T1 | |
LLU|FUN_009806-T1 | EPHRIN TYPE-B RECEPTOR |
LLU|FUN_009807-T1 | |
LLU|FUN_009808-T1 | TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE |
LLU|FUN_009809-T1 | MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN |
LLU|FUN_009810-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_009811-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_009812-T1 | GUANYL-NUCLEOTIDE EXCHANGE FACTOR |
LLU|FUN_009813-T1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
LLU|FUN_009814-T1 | |
LLU|FUN_009815-T1 | |
LLU|FUN_009816-T1 | CYTOCHROME C OXIDASE SUBUNIT 6C |
LLU|FUN_009817-T1 | |
LLU|FUN_009818-T1 | HOMEOBOX PROTEIN, PUTATIVE-RELATED |
LLU|FUN_009819-T1 | |
LLU|FUN_009820-T1 | ANKYRIN REPEAT AND EF-HAND DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_009821-T1 | |
LLU|FUN_009822-T1 | UNCHARACTERIZED |
LLU|FUN_009823-T1 | |
LLU|FUN_009824-T1 | NEURALIZED |
LLU|FUN_009825-T1 | UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_009826-T1 | |
LLU|FUN_009827-T1 | |
LLU|FUN_009828-T1 | NEURALIZED |
LLU|FUN_009829-T1 | FTP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_009830-T1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
LLU|FUN_009831-T1 | SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE |
LLU|FUN_009832-T1 | |
LLU|FUN_009833-T1 | |
LLU|FUN_009834-T1 | |
LLU|FUN_009835-T1 | |
LLU|FUN_009836-T1 | |
LLU|FUN_009837-T1 | |
LLU|FUN_009838-T1 |