Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_006107-T1 | CYCLINS |
LLU|FUN_006108-T1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
LLU|FUN_006109-T1 | YES-ASSOCIATED PROTEIN YAP1 FAMILY MEMBER |
LLU|FUN_006110-T1 | |
LLU|FUN_006111-T1 | |
LLU|FUN_006112-T1 | |
LLU|FUN_006113-T1 | |
LLU|FUN_006114-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
LLU|FUN_006115-T1 | |
LLU|FUN_006116-T1 | |
LLU|FUN_006117-T1 | |
LLU|FUN_006118-T1 | |
LLU|FUN_006119-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_006120-T1 | MRNA-CAPPING ENZYME |
LLU|FUN_006121-T1 | ACYL-COA THIOESTERASE |
LLU|FUN_006122-T1 | SORTING NEXIN |
LLU|FUN_006123-T1 | |
LLU|FUN_006124-T1 | ANTIGEN BSP, PUTATIVE-RELATED |
LLU|FUN_006125-T1 | |
LLU|FUN_006127-T1 | CYSTEINE-RICH PDF MOTIF DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_006128-T1 | STABILIN |
LLU|FUN_006129-T1 | |
LLU|FUN_006130-T1 | STABILIN |
LLU|FUN_006131-T1 | |
LLU|FUN_006132-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
LLU|FUN_006133-T1 | |
LLU|FUN_006134-T1 | CHROMOSOME 1 OPEN READING FRAME 112 |
LLU|FUN_006135-T1 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 19 |
LLU|FUN_006136-T1 | 6-PHOSPHOGLUCONOLACTONASE |
LLU|FUN_006137-T1 | |
LLU|FUN_006138-T1 | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD |
LLU|FUN_006139-T1 | FARNESYLCYSTEINE LYASE |
LLU|FUN_006140-T1 | DIABLO HOMOLOG, MITOCHONDRIAL |
LLU|FUN_006141-T1 | HYDROLASE |
LLU|FUN_006142-T1 | UNCHARACTERIZED |
LLU|FUN_006143-T1 | SINGLE-STRANDED DNA-BINDING PROTEIN |
LLU|FUN_006144-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
LLU|FUN_006145-T1 | TRNA METHYLTRANSFERASE |
LLU|FUN_006146-T1 | ADP RIBOSYLATION FACTOR-RELATED |
LLU|FUN_006147-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
LLU|FUN_006148-T1 | |
LLU|FUN_006149-T1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
LLU|FUN_006150-T1 | |
LLU|FUN_006151-T1 | - |
LLU|FUN_006152-T1 | |
LLU|FUN_006153-T1 | G PROTEIN-COUPLED RECEPTOR KINASE/RIBOSOMAL PROTEIN S6 KINASE |
LLU|FUN_006154-T1 | |
LLU|FUN_006155-T1 | |
LLU|FUN_006156-T1 | USP DOMAIN-CONTAINING PROTEIN |
LLU|FUN_006157-T1 |