Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_005903-T1 | |
LLU|FUN_005904-T1 | UNC-93 RELATED |
LLU|FUN_005905-T1 | |
LLU|FUN_005906-T1 | UNC-93 RELATED |
LLU|FUN_005907-T1 | |
LLU|FUN_005908-T1 | |
LLU|FUN_005909-T1 | |
LLU|FUN_005910-T1 | GPI TRANSAMIDASE COMPONENT PIG-S |
LLU|FUN_005911-T1 | |
LLU|FUN_005912-T1 | MOLTING PROTEIN MLT-4 |
LLU|FUN_005913-T1 | GOS-28 SNARE- RELATED |
LLU|FUN_005914-T1 | |
LLU|FUN_005915-T1 | |
LLU|FUN_005916-T1 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
LLU|FUN_005917-T1 | LIPOPOLYSACCHARIDE CHOLINEPHOSPHOTRANSFERASE LICD |
LLU|FUN_005918-T1 | TRANSFERASE, PUTATIVE-RELATED |
LLU|FUN_005919-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
LLU|FUN_005920-T1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_005921-T1 | MULTIDRUG RESISTANCE PROTEIN |
LLU|FUN_005922-T1 | |
LLU|FUN_005923-T1 | |
LLU|FUN_005924-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
LLU|FUN_005925-T1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT ALPHA, MITOCHONDRIAL |
LLU|FUN_005926-T1 | DESUMOYLATING ISOPEPTIDASE |
LLU|FUN_005927-T1 | PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT H |
LLU|FUN_005928-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_005929-T1 | |
LLU|FUN_005930-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_005931-T1 | XANTHINE DEHYDROGENASE |
LLU|FUN_005932-T1 | |
LLU|FUN_005933-T1 | |
LLU|FUN_005934-T1 | |
LLU|FUN_005935-T1 | AGAP005574-PA |
LLU|FUN_005936-T1 | |
LLU|FUN_005937-T1 | OVOCHYMASE-RELATED |
LLU|FUN_005938-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
LLU|FUN_005939-T1 | CALCIUM-SIGNAL MODULATING CYCLOPHILIN LIGAND CAML |
LLU|FUN_005940-T1 | SOLUTE CARRIER FAMILY 25 |
LLU|FUN_005941-T1 | FOLLICULIN FAMILY MEMBER |
LLU|FUN_005942-T1 | PROTOHEME IX FARNESYLTRANSFERASE, MITOCHONDRIAL |
LLU|FUN_005943-T1 | |
LLU|FUN_005944-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
LLU|FUN_005945-T1 | PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER |
LLU|FUN_005946-T1 | PUTATIVE TREBLE-CLEF ZINC-FINGER C2ORF42 FAMILY MEMBER |
LLU|FUN_005947-T1 | |
LLU|FUN_005948-T1 | |
LLU|FUN_005949-T1 | |
LLU|FUN_005950-T1 | PROTEIN DISPATCHED-RELATED |
LLU|FUN_005951-T1 | PROTEIN DISPATCHED-RELATED |
LLU|FUN_005952-T1 |