Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_005953-T1 | PHD-TYPE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_005954-T1 | |
LLU|FUN_005955-T1 | |
LLU|FUN_005956-T1 | |
LLU|FUN_005957-T1 | CAS SCAFFOLDING PROTEIN |
LLU|FUN_005958-T1 | |
LLU|FUN_005959-T1 | TESTIS, PROSTATE AND PLACENTA-EXPRESSED PROTEIN |
LLU|FUN_005960-T1 | NUCLEAR HORMONE RECEPTOR |
LLU|FUN_005961-T1 | UNCHARACTERIZED |
LLU|FUN_005962-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 11 |
LLU|FUN_005963-T1 | ANOCTAMIN |
LLU|FUN_005964-T1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
LLU|FUN_005965-T1 | ZINC FINGER PROTEIN |
LLU|FUN_005966-T1 | |
LLU|FUN_005967-T1 | |
LLU|FUN_005968-T1 | HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN |
LLU|FUN_005969-T1 | |
LLU|FUN_005970-T1 | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
LLU|FUN_005971-T1 | COPINE |
LLU|FUN_005972-T1 | GEO11419P1 |
LLU|FUN_005973-T1 | GEO11419P1 |
LLU|FUN_005974-T1 | |
LLU|FUN_005975-T1 | GEO11419P1 |
LLU|FUN_005976-T1 | COPINE |
LLU|FUN_005977-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005978-T1 | |
LLU|FUN_005979-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005981-T1 | |
LLU|FUN_005982-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005983-T1 | |
LLU|FUN_005984-T1 | |
LLU|FUN_005985-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005986-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005987-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005988-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005989-T1 | |
LLU|FUN_005990-T1 | |
LLU|FUN_005991-T1 | |
LLU|FUN_005992-T1 | CYTOCHROME B561/FERRIC REDUCTASE TRANSMEMBRANE |
LLU|FUN_005993-T1 | |
LLU|FUN_005994-T1 | |
LLU|FUN_005995-T1 | DIPHOSPHOINOSITOL POLYPHOSPHATE PHOSPHOHYDROLASE |
LLU|FUN_005996-T1 | ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1 |
LLU|FUN_005997-T1 | |
LLU|FUN_005998-T1 | |
LLU|FUN_005999-T1 | NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED |
LLU|FUN_006000-T1 | CYTOKINE RECEPTOR |
LLU|FUN_006001-T1 | |
LLU|FUN_006002-T1 | HILLARIN |
LLU|FUN_006003-T1 |